RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CSF3RQ99062 836 aa8.87□□□□□ -0.99
TRIM28-208ENST00000597172 REEP4Q9H6H4 257 aa8.87□□□□□ -0.99
TRIM28-208ENST00000597172 ACTR5Q9H9F9 607 aaPredicted RBP8.87□□□□□ -0.99
TRIM28-208ENST00000597172 CLK4Q9HAZ1 481 aaKnown RBP8.87□□□□□ -0.99
TRIM28-208ENST00000597172 LYARQ9NX58 379 aaKnown RBP8.87□□□□□ -0.99
TRIM28-208ENST00000597172 HCN3Q9P1Z3 774 aa8.87□□□□□ -0.99
TRIM28-208ENST00000597172 NDOR1Q9UHB4 597 aa8.87□□□□□ -0.99
TRIM28-208ENST00000597172 ERVK-11Q9UQG0 969 aa8.87□□□□□ -0.99
TRIM28-208ENST00000597172 PCDHA9Q9Y5H5 950 aa8.87□□□□□ -0.99
TRIM28-208ENST00000597172 B3GALT1Q9Y5Z6 326 aa8.87□□□□□ -0.99
TRIM28-208ENST00000597172 CAPN7Q9Y6W3 813 aa8.87□□□□□ -0.99
TRIM28-208ENST00000597172 A0A1B0GX78 115 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 ASPDHA6ND91 283 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 GLOD5A6NK44 160 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 FBP2O00757 339 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 SCAMP2O15127 329 aaKnown RBP8.86□□□□□ -0.99
TRIM28-208ENST00000597172 TBX19O60806 448 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 SCN2BO60939 215 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 KIAA0754O94854 1291 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 UBOX5O94941 541 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 CBX6O95503 412 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 COX4I1P13073 169 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 DDCP20711 480 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 CAPN3P20807 821 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 CPN2P22792 545 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 CLNS1AP54105 237 aaKnown RBP8.86□□□□□ -0.99
TRIM28-208ENST00000597172 RAB38P57729 211 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 RCAN2Q14206 197 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 ERV3-1Q14264 604 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 HEPACAMQ14CZ8 416 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 TLR1Q15399 786 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 VPS26BQ4G0F5 336 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 SPANXN4Q5MJ08 99 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 DCAF12Q5T6F0 453 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 NIPAL1Q6NVV3 410 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 PRMT9Q6P2P2 845 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 CYB5D1Q6P9G0 228 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 CEACAM20Q6UY09 585 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 MED25Q71SY5 747 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 GDF7Q7Z4P5 450 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 CAMKMTQ7Z624 323 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 SNX32Q86XE0 403 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 FAM9CQ8IZT9 166 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 DSELQ8IZU8 1212 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 POU5F2Q8N7G0 328 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 GLB1L3Q8NCI6 653 aaPredicted RBP8.86□□□□□ -0.99
TRIM28-208ENST00000597172 OR8J2Q8NGG1 315 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 DNAJB14Q8TBM8 379 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 VPS33AQ96AX1 596 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 MTERF3Q96E29 417 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 PEX11GQ96HA9 241 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 ZNF304Q9HCX3 659 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 MRGBPQ9NV56 204 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 MS4A12Q9NXJ0 267 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 TAS2R7Q9NYW3 318 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 C5AR2Q9P296 337 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 PHF11Q9UIL8 331 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 CDC14AQ9UNH5 594 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 PCDHGA3Q9Y5H0 932 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 SPTBP11277 2137 aa8.86□□□□□ -0.99
TRIM28-208ENST00000597172 CROCCQ5TZA2 2017 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 SCN3AQ9NY46 2000 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 CNTRLQ7Z7A1 2325 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 C1orf226A1L170 272 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 OR2W5A6NFC9 320 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 MEN1O00255 615 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 EBAG9O00559 213 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 RRP9O43818 475 aaKnown RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 GUCY1B2O75343 617 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 JRKO75564 520 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 IL6P05231 212 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 PGRP06401 933 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 C8BP07358 591 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 SNRPB2P08579 225 aaKnown RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 HBQ1P09105 142 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 ATXN8OSP0DMR3 200 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 RNH1P13489 461 aaKnown RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 COX7A2P14406 83 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 PRDX6P30041 224 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 ALDH9A1P49189 494 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 EFNA3P52797 238 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 RAB15P59190 212 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 SKP1P63208 163 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 DCDP81605 110 aaKnown RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 TNFRSF17Q02223 184 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 DUSP2Q05923 314 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 ABHD18Q0P651 414 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 BNIP1Q12981 228 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 CYLC2Q14093 348 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 DSG2Q14126 1118 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 INPP5JQ15735 1006 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-208ENST00000597172 ZNF750Q32MQ0 723 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 PGS1Q32NB8 556 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 FAM174BQ3ZCQ3 159 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 NKAIN1Q4KMZ8 207 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 PAGE3Q5JUK9 113 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 CPTPQ5TA50 214 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 OR4F3Q6IEY1 312 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 FAM180BQ6P0A1 224 aa8.85□□□□□ -0.99
TRIM28-208ENST00000597172 SLC48A1Q6P1K1 146 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms