RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 LINC00032P0C843 101 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 CPMP14384 443 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 DRD2P14416 443 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 XKP51811 444 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 ERVK-8P63133 956 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 OC90Q02509 493 aaPredicted RBP13.53□□□□□ -0.24
VRK3-206ENST00000594090 ZNF267Q14586 743 aaPredicted RBP13.53□□□□□ -0.24
VRK3-206ENST00000594090 KIAA0040Q15053 153 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 NR6A1Q15406 480 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 OR1C1Q15619 314 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 RPUSD3Q6P087 351 aaKnown RBP13.53□□□□□ -0.24
VRK3-206ENST00000594090 DDIASQ8IXT1 998 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 ANKRD42Q8N9B4 389 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 KLHL29Q96CT2 875 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 C19orf60Q96EN9 201 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 CXorf21Q9HAI6 301 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 LRTM1Q9HBL6 345 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 ASF1BQ9NVP2 202 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 C1orf109Q9NX04 203 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 MYOTQ9UBF9 498 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 ZDHHC2Q9UIJ5 367 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 PSME2Q9UL46 239 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 ERVK-19Q9WJR5 959 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 NTNG1Q9Y2I2 539 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 POLR3HQ9Y535 204 aaPredicted RBP13.53□□□□□ -0.24
VRK3-206ENST00000594090 TMEM114B3SHH9 223 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 PIP5K1BO14986 540 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 ITM2AO43736 263 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 SEC22BO75396 215 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 LYPLA1O75608 230 aaPredicted RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 ERAL1O75616 437 aaKnown RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 WISP1O95388 367 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 HSPA4LO95757 839 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 H2AFXP16104 143 aaPredicted RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 PORP16435 677 aaPredicted RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 TRHRP34981 398 aaPredicted RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 CYB561P49447 251 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 HK2P52789 917 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 RNF4P78317 190 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 DUSP2Q05923 314 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 HEPACAMQ14CZ8 416 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 INAQ16352 499 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 ZNF766Q5HY98 468 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 C16orf47Q6ZP98 133 aaPredicted RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 Q6ZSR9 355 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 GALNT12Q8IXK2 581 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 C9orf40Q8IXQ3 194 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 HORMAD2Q8N7B1 307 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 CDC26Q8NHZ8 85 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 CNRIP1Q96F85 164 aaPredicted RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 FCRL1Q96LA6 429 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 BARD1Q99728 777 aaKnown RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 TRIM45Q9H8W5 580 aaPredicted RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 LIN28AQ9H9Z2 209 aaKnown RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 MYNNQ9NPC7 610 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.52□□□□□ -0.25
VRK3-206ENST00000594090 ARGLU1Q9NWB6 273 aaPredicted RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 LRFN1Q9P244 771 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 UTS2RQ9UKP6 389 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 YARS2Q9Y2Z4 477 aaKnown RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 PCDHGB6Q9Y5F9 930 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 COPG1Q9Y678 874 aaKnown RBP13.52□□□□□ -0.25
VRK3-206ENST00000594090 ZNF780BQ9Y6R6 833 aa13.52□□□□□ -0.25
VRK3-206ENST00000594090 SHANK1Q9Y566 2161 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 WWP2O00308 870 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 LSM1O15116 133 aaKnown RBP13.51□□□□□ -0.25
VRK3-206ENST00000594090 OR2J2O76002 312 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 NEURL1O76050 574 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 CLPSP04118 112 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 ATP1B1P05026 303 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 CT62P0C5K7 136 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 CD46P15529 392 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 CSNK2A2P19784 350 aaPredicted RBP13.51□□□□□ -0.25
VRK3-206ENST00000594090 NT5EP21589 574 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 BGNP21810 368 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 GRK2P25098 689 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 FEN1P39748 380 aaKnown RBP13.51□□□□□ -0.25
VRK3-206ENST00000594090 HLCSP50747 726 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 SSR4P51571 173 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 SLC18A1P54219 525 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 WDR4P57081 412 aaKnown RBP13.51□□□□□ -0.25
VRK3-206ENST00000594090 ABCE1P61221 599 aaKnown RBP13.51□□□□□ -0.25
VRK3-206ENST00000594090 RPL38P63173 70 aaKnown RBP13.51□□□□□ -0.25
VRK3-206ENST00000594090 C6orf163Q5TEZ5 329 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 AGBL2Q5U5Z8 902 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 HHATQ5VTY9 493 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 SPINK14Q6IE38 97 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 NOXRED1Q6NXP6 359 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 FAM180BQ6P0A1 224 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 FAM180AQ6UWF9 173 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 RNF111Q6ZNA4 994 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 ZNF227Q86WZ6 799 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 TMEM156Q8N614 296 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 NUBPLQ8TB37 319 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.51□□□□□ -0.25
VRK3-206ENST00000594090 SCMH1Q96GD3 660 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 ZNF681Q96N22 645 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 RASL10BQ96S79 203 aa13.51□□□□□ -0.25
VRK3-206ENST00000594090 PAIP2Q9BPZ3 127 aaKnown RBP13.51□□□□□ -0.25
VRK3-206ENST00000594090 HES7Q9BYE0 225 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms