RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 FOXC2Q99958 501 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 GPATCH1Q9BRR8 931 aaKnown RBP13.59□□□□□ -0.23
PNKP-202ENST00000593706 TBCDQ9BTW9 1192 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 MS4A8Q9BY19 250 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 CLEC4MQ9H2X3 399 aaPredicted RBP13.59□□□□□ -0.23
PNKP-202ENST00000593706 ZNF703Q9H7S9 590 aaPredicted RBP13.59□□□□□ -0.23
PNKP-202ENST00000593706 SEMA4BQ9NPR2 832 aaPredicted RBP13.59□□□□□ -0.23
PNKP-202ENST00000593706 CCM2LQ9NUG4 571 aaPredicted RBP13.59□□□□□ -0.23
PNKP-202ENST00000593706 SPRR3Q9UBC9 169 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 ZNF180Q9UJW8 692 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 NSD1Q96L73 2696 aaPredicted RBP13.58□□□□□ -0.23
PNKP-202ENST00000593706 SUPT3HB4E1H0 165 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 K7EPI3 171 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 SUPT3HO75486 399 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 CTAG2O75638 210 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 ABHD2P08910 425 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 HIST1H1TP22492 207 aaPredicted RBP13.58□□□□□ -0.24
PNKP-202ENST00000593706 ATP5A1P25705 553 aaKnown RBP13.58□□□□□ -0.24
PNKP-202ENST00000593706 UQCRC1P31930 480 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 KIR2DL3P43628 341 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 STT3AP46977 705 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 PLIN5Q00G26 463 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 TBL3Q12788 808 aaKnown RBP13.58□□□□□ -0.24
PNKP-202ENST00000593706 SNTB1Q13884 538 aaKnown RBP13.58□□□□□ -0.24
PNKP-202ENST00000593706 SETDB1Q15047 1291 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 ACAP2Q15057 778 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 CEBPEQ15744 281 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 UAP1Q16222 522 aaPredicted RBP13.58□□□□□ -0.24
PNKP-202ENST00000593706 FAM83EQ2M2I3 478 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 TMEM35AQ53FP2 167 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 TECRLQ5HYJ1 363 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 RIPPLY2Q5TAB7 128 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 SLC22A10Q63ZE4 541 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 UBE3DQ7Z6J8 389 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 LAS2Q8IYD9 372 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 PLD6Q8N2A8 252 aaKnown RBP13.58□□□□□ -0.24
PNKP-202ENST00000593706 CEP112Q8N8E3 955 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 C7orf57Q8NEG2 295 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 NUBPLQ8TB37 319 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 UBE2E3Q969T4 207 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 SPACA9Q96E40 222 aaPredicted RBP13.58□□□□□ -0.24
PNKP-202ENST00000593706 LRRC46Q96FV0 321 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 ART5Q96L15 291 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 JSRP1Q96MG2 331 aaPredicted RBP13.58□□□□□ -0.24
PNKP-202ENST00000593706 GAL3ST4Q96RP7 486 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 TMUB1Q9BVT8 246 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 TXLNGYQ9BZA5 131 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.58□□□□□ -0.24
PNKP-202ENST00000593706 ST6GALNAC2Q9UJ37 374 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 NFU1Q9UMS0 254 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 MED12Q93074 2177 aa13.58□□□□□ -0.24
PNKP-202ENST00000593706 LRRC14BA6NHZ5 514 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 SYCE1LA8MT33 242 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 SAP18O00422 153 aaKnown RBP13.57□□□□□ -0.24
PNKP-202ENST00000593706 FGF17O60258 216 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 TGFB1P01137 390 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 ENDOUP21128 410 aaKnown RBP13.57□□□□□ -0.24
PNKP-202ENST00000593706 GCAP28676 217 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 PEX19P40855 299 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 RAP1GDS1P52306 607 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 ALDH18A1P54886 795 aaKnown RBP13.57□□□□□ -0.24
PNKP-202ENST00000593706 DDX39BQ13838 428 aaKnown RBP13.57□□□□□ -0.24
PNKP-202ENST00000593706 PIGGQ5H8A4 983 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 CHSY3Q70JA7 882 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 SLC29A4Q7RTT9 530 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 TGIF2LYQ8IUE0 185 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 OR4N5Q8IXE1 308 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 C9orf40Q8IXQ3 194 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 FBXW8Q8N3Y1 598 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 ZNF473Q8WTR7 871 aaKnown RBP13.57□□□□□ -0.24
PNKP-202ENST00000593706 ANKRD9Q96BM1 317 aaPredicted RBP13.57□□□□□ -0.24
PNKP-202ENST00000593706 RBM18Q96H35 190 aaKnown RBP13.57□□□□□ -0.24
PNKP-202ENST00000593706 SENP5Q96HI0 755 aaPredicted RBP13.57□□□□□ -0.24
PNKP-202ENST00000593706 FBXL20Q96IG2 436 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 CENPKQ9BS16 269 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 SLC6A15Q9H2J7 730 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 EPB41L4BQ9H329 900 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 RPF2Q9H7B2 306 aaKnown RBP13.57□□□□□ -0.24
PNKP-202ENST00000593706 ZFP64Q9NPA5 681 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 EDARQ9UNE0 448 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 MED12LQ86YW9 2145 aa13.57□□□□□ -0.24
PNKP-202ENST00000593706 FAM221AA4D161 298 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 HSPB2A8KAH6 182 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 DVL2O14641 736 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 SCELO95171 688 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 LRATO95237 230 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 INHBAP08476 426 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 RFPL3SP0C7P2 107 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 KLK2P20151 261 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 BMP5P22003 454 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 DNASE1P24855 282 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 GDF1P27539 372 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 TYK2P29597 1187 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 SERPINB1P30740 379 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 TRPC1P48995 793 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 SERPINB9P50453 376 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 TNFRSF17Q02223 184 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 PCBP2Q15366 365 aaKnown RBP eCLIP13.56□□□□□ -0.24
PNKP-202ENST00000593706 HSPB2Q16082 182 aa13.56□□□□□ -0.24
PNKP-202ENST00000593706 PFKFB4Q16877 469 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms