RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PROX1Q92786 737 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 BBS4Q96RK4 519 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 TREX2Q9BQ50 279 aaPredicted RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 TMEM168Q9H0V1 697 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 OR51I1Q9H343 314 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 POLMQ9NP87 494 aaPredicted RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 WARS2Q9UGM6 360 aaKnown RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 PSME2Q9UL46 239 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 PRAMEF27A3QJZ7 478 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 GLOD5A6NK44 160 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 FFAR1O14842 300 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 PGRMC2O15173 223 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 RGS10O43665 173 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 CERS1P27544 350 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 MASP1P48740 699 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 STXBP1P61764 594 aaKnown RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 MVKQ03426 396 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 PRSS48Q7RTY5 328 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 ANKRD13BQ86YJ7 626 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 SVOPQ8N4V2 548 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 RASSF5Q8WWW0 418 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 CNRIP1Q96F85 164 aaPredicted RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 ZNF607Q96SK3 696 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 OCEL1Q9H607 264 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 ZNF556Q9HAH1 456 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 ZCCHC3Q9NUD5 404 aaKnown RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 USP36Q9P275 1121 aaKnown RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 CES1P1Q9UKY3 287 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 MDC1Q14676 2089 aaKnown RBP18.6■□□□□ 0.57
CLIP3-206ENST00000593074 TMEM247A6NEH6 219 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 SLC28A2O43868 658 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 MT-ND2P03891 347 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 STT3AP46977 705 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 KCNJ5P48544 419 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 KHKP50053 298 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 RPS15AP62244 130 aaKnown RBP18.6■□□□□ 0.57
CLIP3-206ENST00000593074 TEKQ02763 1124 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 COLEC12Q5KU26 742 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 MLIPQ5VWP3 458 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 ZNF770Q6IQ21 691 aaPredicted RBP18.6■□□□□ 0.57
CLIP3-206ENST00000593074 SLC48A1Q6P1K1 146 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 CHRDL2Q6WN34 429 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 Q6ZSR6 202 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 FAM81AQ8TBF8 368 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 RORBQ92753 470 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 THAP11Q96EK4 314 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 DHRS1Q96LJ7 313 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 ZNF354BQ96LW1 612 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 ALPK1Q96QP1 1244 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 SEMA3GQ9NS98 782 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 ENOPH1Q9UHY7 261 aa18.6■□□□□ 0.57
CLIP3-206ENST00000593074 GPC6Q9Y625 555 aaPredicted RBP18.6■□□□□ 0.57
CLIP3-206ENST00000593074 TRBV23OR9-2A0A075B6M9 112 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 BTN3A3O00478 584 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 VIPP01282 170 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 OR12D1P0DN82 309 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 SYPL1Q16563 259 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 ALG11Q2TAA5 492 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 TJAP1Q5JTD0 557 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 SYT6Q5T7P8 510 aaPredicted RBP18.59■□□□□ 0.57
CLIP3-206ENST00000593074 VN1R4Q7Z5H5 301 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 OR5D16Q8NGK9 328 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 RHOXF1Q8NHV9 184 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 FLVCR1-AS1Q8TAF5 88 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 SLC22A18Q96BI1 424 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 PHF7Q9BWX1 381 aaPredicted RBP18.59■□□□□ 0.57
CLIP3-206ENST00000593074 SRMSQ9H3Y6 488 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 PLCXD1Q9NUJ7 323 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 TOR1BO14657 336 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 SEMA7AO75326 666 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 ERAL1O75616 437 aaKnown RBP18.59■□□□□ 0.57
CLIP3-206ENST00000593074 F3P13726 295 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 ZNF182P17025 639 aaPredicted RBP18.59■□□□□ 0.57
CLIP3-206ENST00000593074 PPP2R1BP30154 601 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 SLC19A1P41440 591 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 MAP2K4P45985 399 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 EMP3P54852 163 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 RAB8AP61006 207 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 CEBPEQ15744 281 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 GPR19Q15760 415 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 BHLHB9Q6PI77 547 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 SZRD1Q7Z422 152 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 P3H2Q8IVL5 708 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 TANKQ92844 425 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 GAL3ST3Q96A11 431 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 COL21A1Q96P44 957 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 BCL7BQ9BQE9 202 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 TRNAU1APQ9NX07 287 aaKnown RBP18.59■□□□□ 0.57
CLIP3-206ENST00000593074 SEC14L3Q9UDX4 400 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 FBXW2Q9UKT8 454 aa18.59■□□□□ 0.57
CLIP3-206ENST00000593074 C10orf142B7Z368 130 aa18.58■□□□□ 0.57
CLIP3-206ENST00000593074 AXIN1O15169 862 aa18.58■□□□□ 0.57
CLIP3-206ENST00000593074 ZW10O43264 779 aa18.58■□□□□ 0.57
CLIP3-206ENST00000593074 PROM1O43490 865 aa18.58■□□□□ 0.57
CLIP3-206ENST00000593074 SERPINB7O75635 380 aa18.58■□□□□ 0.57
CLIP3-206ENST00000593074 GSSP48637 474 aa18.58■□□□□ 0.57
CLIP3-206ENST00000593074 DUSP2Q05923 314 aa18.58■□□□□ 0.57
CLIP3-206ENST00000593074 TGM3Q08188 693 aa18.58■□□□□ 0.57
CLIP3-206ENST00000593074 KIR2DS3Q14952 304 aa18.58■□□□□ 0.57
CLIP3-206ENST00000593074 C18orf63Q68DL7 685 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms