RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ZCCHC10Q8TBK6 192 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 DNASE2BQ8WZ79 361 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 GUCD1Q96NT3 240 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 MUS81Q96NY9 551 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 MBOAT4Q96T53 435 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 ING2Q9H160 280 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 MIR1-1HGQ9H1L0 117 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 OR51I1Q9H343 314 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 BCL2L10Q9HD36 194 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 EXD2Q9NVH0 621 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 PDP1Q9P0J1 537 aaPredicted RBP13.38□□□□□ -0.27
LIG3-205ENST00000585941 KIF17Q9P2E2 1029 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 SCN3AQ9NY46 2000 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 CCDC88CQ9P219 2028 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 A8MVJ9 347 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 AQP9O43315 295 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 SLC28A2O43868 658 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 JRKO75564 520 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 SLITRK5O94991 958 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 IFNW1P05000 195 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 NR2F1P10589 423 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 PVRP15151 417 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 CDH3P22223 829 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 PRKACGP22612 351 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 RRM2P31350 389 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 FEN1P39748 380 aaKnown RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 CRISP3P54108 245 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 TPD52P55327 224 aaPredicted RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 WDR45BQ5MNZ6 344 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 FAHD1Q6P587 224 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 CEP68Q76N32 757 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 Q7L0L9 218 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 C17orf82Q86X59 251 aaPredicted RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 C19orf47Q8N9M1 422 aaKnown RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 SETD9Q8NE22 299 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 C1orf216Q8TAB5 229 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 PROX1Q92786 737 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 ELP4Q96EB1 424 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 C10orf90Q96M02 699 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 KLHL25Q9H0H3 589 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 DDX18Q9NVP1 670 aaKnown RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 CALML5Q9NZT1 146 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 NTMQ9P121 344 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 TRPC4Q9UBN4 977 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 SIT1Q9Y3P8 196 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 ENPP4Q9Y6X5 453 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 TMEM131Q92545 1883 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 LOC100130705A0A1B0GUX0 176 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 TRIM64CA6NLI5 447 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 TNFRSF11BO00300 401 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 SRPX2O60687 465 aaPredicted RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 DIRAS1O95057 198 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 MFN2O95140 757 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 BMP10O95393 424 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 AGR2O95994 175 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 EIF2S1P05198 315 aaKnown RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 IFI6P09912 130 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 ETS2P15036 469 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 ATP6V1B1P15313 513 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 TYRP1P17643 537 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 RHCEP18577 417 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 XCR1P46094 333 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 CAPZBP47756 277 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 MAZP56270 477 aaKnown RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 PPP1R8Q12972 351 aaKnown RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 RUNX2Q13950 521 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 RBM48Q5RL73 367 aaKnown RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 OGFOD3Q6PK18 319 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 MAMSTRQ6ZN01 415 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 USP53Q70EK8 1073 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 SFTPA2Q8IWL1 248 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 OFCC1Q8IZS5 231 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 LGI4Q8N135 537 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 ATG16L2Q8NAA4 619 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 XAGE5Q8WWM1 108 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 KLHL6Q8WZ60 621 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 RAB8BQ92930 207 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 TCTN2Q96GX1 697 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 SLC38A3Q99624 504 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 PIP5K1AQ99755 562 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 BTBD2Q9BX70 525 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 AMBRA1Q9C0C7 1298 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 DUSP15Q9H1R2 295 aaPredicted RBP13.37□□□□□ -0.27
LIG3-205ENST00000585941 SERHL2Q9H4I8 314 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 LIPT1Q9Y234 373 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 HSPE1-MOB4S4R3N1 261 aa13.37□□□□□ -0.27
LIG3-205ENST00000585941 PRUNE2Q8WUY3 3088 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 A0A0G2JPF8 293 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 C19orf67A6NJJ6 358 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 DUXAA6NLW8 204 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 WASHC1A8K0Z3 465 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 HNRNPCL2B2RXH8 293 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 HNRNPCL3B7ZW38 293 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 GALR3O60755 368 aaPredicted RBP13.36□□□□□ -0.27
LIG3-205ENST00000585941 SEC24DO94855 1032 aaPredicted RBP13.36□□□□□ -0.27
LIG3-205ENST00000585941 CLIC3O95833 236 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 HMGN2P05204 90 aaKnown RBP13.36□□□□□ -0.27
LIG3-205ENST00000585941 PROS1P07225 676 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 HNRNPCL4P0DMR1 293 aa13.36□□□□□ -0.27
LIG3-205ENST00000585941 OR12D1P0DN82 309 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms