RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GK5Q6ZS86 529 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 FAM47EQ6ZV65 393 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 NUDT13Q86X67 352 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 ST13P4Q8IZP2 240 aaPredicted RBP18.9■□□□□ 0.62
SHMT1-209ENST00000582653 NUBPLQ8TB37 319 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 FBXL20Q96IG2 436 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 NTMT1Q9BV86 223 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 ERVK-6Q9BXR3 956 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 IL1RL2Q9HB29 575 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 SEMA4BQ9NPR2 832 aaPredicted RBP18.9■□□□□ 0.62
SHMT1-209ENST00000582653 SACM1LQ9NTJ5 587 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 ERVK-19Q9WJR5 959 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 RNF6Q9Y252 685 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 TACC2O95359 2948 aa18.9■□□□□ 0.62
SHMT1-209ENST00000582653 A0A1B0GVC2 190 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 OR14I1A6ND48 311 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 NPIPA2E9PIF3 369 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 NPIPA3F8WFD2 350 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 PPP6CO00743 305 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 OR10H2O60403 315 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 NADKO95544 446 aaPredicted RBP18.89■□□□□ 0.61
SHMT1-209ENST00000582653 SBK3P0C264 359 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 COL6A2P12110 1019 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 TSPAN8P19075 237 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 PIGAP37287 484 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 PMPCAQ10713 525 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 TSNAXIP1Q2TAA8 658 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 ZNF791Q3KP31 576 aaPredicted RBP18.89■□□□□ 0.61
SHMT1-209ENST00000582653 GLE1Q53GS7 698 aaKnown RBP18.89■□□□□ 0.61
SHMT1-209ENST00000582653 FRG2Q64ET8 278 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 LYPD8Q6UX82 237 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 MEX3BQ6ZN04 569 aaKnown RBP18.89■□□□□ 0.61
SHMT1-209ENST00000582653 ACAD11Q709F0 780 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 TAOK1Q7L7X3 1001 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 RPRMLQ8N4K4 120 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 TMEM151AQ8N4L1 468 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 TMEM251Q8N6I4 163 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 OR4F6Q8NGB9 312 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 RIT1Q92963 219 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 FRG2BQ96QU4 278 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 SERPINI1Q99574 410 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 FARSBQ9NSD9 589 aaKnown RBP18.89■□□□□ 0.61
SHMT1-209ENST00000582653 TEX10Q9NXF1 929 aaPredicted RBP18.89■□□□□ 0.61
SHMT1-209ENST00000582653 ZNF180Q9UJW8 692 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 TMCO1Q9UM00 188 aa18.89■□□□□ 0.61
SHMT1-209ENST00000582653 A0A087WUV0 522 aaPredicted RBP18.88■□□□□ 0.61
SHMT1-209ENST00000582653 IQANK1A0A1B0GTG1 560 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 P04436 131 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 KLK1P06870 262 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 MAGEA5P43359 124 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 CDH13P55290 713 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 KRTAP10-9P60411 292 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 FOXO1Q12778 655 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 SLC10A1Q14973 349 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 MILR1Q7Z6M3 343 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 FAM109AQ8N4B1 249 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 SLC15A4Q8N697 577 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 CHTF18Q8WVB6 975 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 ART5Q96L15 291 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 GAL3ST4Q96RP7 486 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 MRPL57Q9BQC6 102 aaKnown RBP18.88■□□□□ 0.61
SHMT1-209ENST00000582653 MRPL1Q9BYD6 325 aaKnown RBP18.88■□□□□ 0.61
SHMT1-209ENST00000582653 WDR41Q9HAD4 459 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 MCCC2Q9HCC0 563 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 KCNJ16Q9NPI9 418 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 RYDENQ9NUL5 291 aaKnown RBP18.88■□□□□ 0.61
SHMT1-209ENST00000582653 TUBA8Q9NY65 449 aaPredicted RBP18.88■□□□□ 0.61
SHMT1-209ENST00000582653 NFU1Q9UMS0 254 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 LIPGQ9Y5X9 500 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 EML6Q6ZMW3 1958 aa18.88■□□□□ 0.61
SHMT1-209ENST00000582653 BCKDKO14874 412 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 SUSD5O60279 629 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 TOXO94900 526 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 CLPSP04118 112 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 CELA3AP09093 270 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 IGFBP2P18065 325 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 CNTFP26441 200 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 SLC37A1P57057 533 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 TLE4Q04727 773 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 CACNA1CQ13936 2221 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 SPRED3Q2MJR0 410 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 TEX35Q5T0J7 233 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 SLC22A10Q63ZE4 541 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 RNF111Q6ZNA4 994 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 TRILQ7L0X0 811 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 SLC22A8Q8TCC7 542 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 AKAP9Q99996 3911 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 PELOQ9BRX2 385 aaKnown RBP18.87■□□□□ 0.61
SHMT1-209ENST00000582653 UCK2Q9BZX2 261 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 MRPL46Q9H2W6 279 aaKnown RBP18.87■□□□□ 0.61
SHMT1-209ENST00000582653 SH2D2AQ9NP31 389 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 PNPLA3Q9NST1 481 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.87■□□□□ 0.61
SHMT1-209ENST00000582653 TNFRSF10DQ9UBN6 386 aa18.87■□□□□ 0.61
SHMT1-209ENST00000582653 ATP6AP2A0A1C7CYW4 349 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 A8MT66 165 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 ATP6AP2O75787 350 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 SEMA3DO95025 777 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 RPS17P08708 135 aaKnown RBP18.86■□□□□ 0.61
SHMT1-209ENST00000582653 SNRPAP09012 282 aaKnown RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms