RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 KRT87PA6NCN2 255 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 ATP6V1G2O95670 118 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 NPPAP01160 153 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 RNF224P0DH78 156 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 MTHFD1P11586 935 aaKnown RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 NPPBP16860 134 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 AMD1P17707 334 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 PRPH2P23942 346 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 RAB28P51157 221 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 CCL11P51671 97 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 CCR8P51685 355 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 NEK2P51955 445 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 CLNS1AP54105 237 aaKnown RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 GFERP55789 205 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 HMGCS1Q01581 520 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 DDX39BQ13838 428 aaKnown RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 ZXDCQ2QGD7 858 aaPredicted RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 EIF2S3LQ2VIR3 472 aaKnown RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 IYDQ6PHW0 289 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 RPTNQ6XPR3 784 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 HACD2Q6Y1H2 254 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 PLXDC1Q8IUK5 500 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 TRIM48Q8IWZ4 208 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 FBXW8Q8N3Y1 598 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 NEIL2Q969S2 332 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 SPDL1Q96EA4 605 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 WDR34Q96EX3 536 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 TGM7Q96PF1 710 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 OR6C1Q96RD1 312 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 NPAS2Q99743 824 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 HOPXQ9BPY8 73 aaPredicted RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 AIF1LQ9BQI0 150 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 ACPTQ9BZG2 426 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 DPY30Q9C005 99 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 PITHD1Q9GZP4 211 aaPredicted RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 PELI2Q9HAT8 420 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 SPAG4Q9NPE6 437 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 FARSBQ9NSD9 589 aaKnown RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 ADA2Q9NZK5 511 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 VPS29Q9UBQ0 182 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 RUVBL1Q9Y265 456 aaKnown RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 ICE1Q9Y2F5 2266 aa9.69□□□□□ -0.86
SS18-221ENST00000582448 PCYT1BQ9Y5K3 369 aaPredicted RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 CFAP20Q9Y6A4 193 aaKnown RBP9.69□□□□□ -0.86
SS18-221ENST00000582448 C15orf38-AP3S2A0A0A6YYH1 394 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 A6NCN8 305 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 NPIPB8E9PQR5 432 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 FOXE1O00358 373 aaPredicted RBP9.68□□□□□ -0.86
SS18-221ENST00000582448 CREG1O75629 220 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 IL6P05231 212 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 ERGP11308 486 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 G6PDP11413 515 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 JAK1P23458 1154 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 HRH2P25021 359 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 SHMT2P34897 504 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 GRK3P35626 688 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 PSME3P61289 254 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 UFM1P61960 85 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 ABATP80404 500 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 ACSM2AQ08AH3 577 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 CHAF1BQ13112 559 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 NFYCQ13952 458 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 RCAN2Q14206 197 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 RPE65Q16518 533 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 SPATS1Q496A3 300 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 VPS26BQ4G0F5 336 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 NADK2Q4G0N4 442 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 RFTN2Q52LD8 501 aaPredicted RBP9.68□□□□□ -0.86
SS18-221ENST00000582448 SPIN4Q56A73 249 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 LCE4AQ5TA78 99 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 ACSM2BQ68CK6 577 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 SUSD1Q6UWL2 747 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 ABRAXAS1Q6UWZ7 409 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 WASH2PQ6VEQ5 465 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 ARPINQ7Z6K5 226 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 LIX1Q8N485 282 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 OR7G3Q8NG95 312 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 OR9I1Q8NGQ6 314 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 OR2L8Q8NGY9 312 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 JADE3Q92613 823 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 SLC22A18Q96BI1 424 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 IL17FQ96PD4 163 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 OR4K3Q96R72 315 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 CDRT15Q96T59 188 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 MTERF1Q99551 399 aaKnown RBP9.68□□□□□ -0.86
SS18-221ENST00000582448 CENPKQ9BS16 269 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 WASH6PQ9NQA3 447 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 AHSPQ9NZD4 102 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 LUZP4Q9P127 313 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 CPNE7Q9UBL6 633 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 TAC3Q9UHF0 121 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 KCND3Q9UK17 655 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 PRDM4Q9UKN5 801 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 PADI1Q9ULC6 663 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 PLAGL1Q9UM63 463 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 L3MBTL1Q9Y468 752 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 CCL27Q9Y4X3 112 aa9.68□□□□□ -0.86
SS18-221ENST00000582448 CACNA1DQ01668 2161 aa9.67□□□□□ -0.86
SS18-221ENST00000582448 A0A088AWK7 358 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms