RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TP53I11O14683 189 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 CTNSO60931 367 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 IGKV3-11P04433 115 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 H2AFZP0C0S5 128 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 TNNI3P19429 210 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 RAB38P57729 211 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 FOXL1Q12952 345 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 RPS6KA2Q15349 733 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 TSTD2Q5T7W7 516 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 H2AFVQ71UI9 128 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 SPPL2AQ8TCT8 520 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 CTNNBL1Q8WYA6 563 aaPredicted RBP14.52□□□□□ -0.09
VPS53-218ENST00000575207 NPLQ9BXD5 320 aaPredicted RBP14.52□□□□□ -0.09
VPS53-218ENST00000575207 DNAJC11Q9NVH1 559 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 ARL15Q9NXU5 204 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 PCDHB10Q9UN67 800 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 GPR52Q9Y2T5 361 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 MYOCOSA0A1B0GUC4 107 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 GOLGA6L9A6NEM1 432 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 ARAFP10398 606 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 PTNP21246 168 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 CASP3P42574 277 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 MSH2P43246 934 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 REXO1L1PQ8IX06 675 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 ASB11Q8WXH4 323 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 ALKBH8Q96BT7 664 aaKnown RBP14.51□□□□□ -0.09
VPS53-218ENST00000575207 RHBDF1Q96CC6 855 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 ZNF778Q96MU6 729 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 BIRC8Q96P09 236 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 BTBD9Q96Q07 612 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 OR2B2Q9GZK3 357 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 KLHL31Q9H511 634 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 RNF122Q9H9V4 155 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 PLSCR4Q9NRQ2 329 aa14.51□□□□□ -0.09
VPS53-218ENST00000575207 TEX10Q9NXF1 929 aaPredicted RBP14.51□□□□□ -0.09
VPS53-218ENST00000575207 hCG_1818297A0A087WSY0 165 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 H7C417 338 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 NDUFS8O00217 210 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 CYR61O00622 381 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 GNB5O14775 395 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 NIPSNAP2O75323 286 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 NDUFS3O75489 264 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 VSIG8P0DPA2 414 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 PSMB1P20618 241 aaKnown RBP14.5□□□□□ -0.09
VPS53-218ENST00000575207 AHRP35869 848 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 SCTRP47872 440 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 SCGB2A2Q13296 93 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 CDKL3Q8IVW4 592 aaPredicted RBP14.5□□□□□ -0.09
VPS53-218ENST00000575207 TBC1D19Q8N5T2 526 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 FAM47BQ8NA70 645 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 OR1J4Q8NGS1 313 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 FIG4Q92562 907 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 C3orf49Q96BT1 292 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 PYCR2Q96C36 320 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 SENP5Q96HI0 755 aaPredicted RBP14.5□□□□□ -0.09
VPS53-218ENST00000575207 JMJD8Q96S16 334 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 AICDAQ9GZX7 198 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 NGBQ9NPG2 151 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 GTF3C3Q9Y5Q9 886 aa14.5□□□□□ -0.09
VPS53-218ENST00000575207 C3orf80F5H4A9 247 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 APOC4-APOC2K7ER74 178 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 CDC7O00311 574 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 CD3EAPO15446 510 aaKnown RBP14.49□□□□□ -0.09
VPS53-218ENST00000575207 SHOX2O60902 331 aaPredicted RBP14.49□□□□□ -0.09
VPS53-218ENST00000575207 APOC2P02655 101 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 NPPBP16860 134 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 ZNF23P17027 643 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 ZFP36P26651 326 aaKnown RBP14.49□□□□□ -0.09
VPS53-218ENST00000575207 EFNA4P52798 201 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 BTN3A2P78410 334 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 STX4Q12846 297 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 SERTAD2Q14140 314 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 KBTBD12Q3ZCT8 623 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 ALKBH2Q6NS38 261 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 LCTLQ6UWM7 567 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 FAM214BQ7L5A3 538 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 ATG4DQ86TL0 474 aaPredicted RBP14.49□□□□□ -0.09
VPS53-218ENST00000575207 OR14L1PQ8NHC6 308 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 FANCFQ9NPI8 374 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 CBLN4Q9NTU7 201 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 GALPQ9UBC7 116 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 ING1Q9UK53 422 aaPredicted RBP14.49□□□□□ -0.09
VPS53-218ENST00000575207 SNX8Q9Y5X2 465 aa14.49□□□□□ -0.09
VPS53-218ENST00000575207 CTAGE15A4D2H0 777 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 SMAD9O15198 467 aaKnown RBP14.48□□□□□ -0.09
VPS53-218ENST00000575207 ZBTB14O43829 449 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 CDH16O75309 829 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 RGS9O75916 674 aaPredicted RBP14.48□□□□□ -0.09
VPS53-218ENST00000575207 FMO4P31512 558 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 FBXW4P57775 412 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 BSPH1Q075Z2 132 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 BCL2A1Q16548 175 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 PARP6Q2NL67 630 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 AAGABQ6PD74 315 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 ZNF793Q6ZN11 406 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 CTAGE6Q86UF2 777 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 IFNEQ86WN2 208 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 MPP5Q8N3R9 675 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 GPATCH11Q8N954 259 aa14.48□□□□□ -0.09
VPS53-218ENST00000575207 PIMREGQ9BSJ6 248 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms