RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 FAM13CQ8NE31 585 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 SPATA4Q8NEY3 305 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 DOK4Q8TEW6 326 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 CENPKQ9BS16 269 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 ERP44Q9BS26 406 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 ERVK-6Q9BXR3 956 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 ZNF717Q9BY31 904 aaPredicted RBP19.37■□□□□ 0.69
VPS53-216ENST00000574029 POLDIP3Q9BY77 421 aaKnown RBP19.37■□□□□ 0.69
VPS53-216ENST00000574029 WWTR1Q9GZV5 400 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 SLC6A15Q9H2J7 730 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 ZNF358Q9NW07 568 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 ERVK-19Q9WJR5 959 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 SPG11Q96JI7 2443 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 OR6C76A6NM76 312 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 FAM155BO75949 473 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 GPR75O95800 540 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 CLPSP04118 112 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 MTHFD2P13995 350 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 CD99P14209 185 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 PEX19P40855 299 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 BUD31P41223 144 aaPredicted RBP19.36■□□□□ 0.69
VPS53-216ENST00000574029 KIR2DL3P43628 341 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 SLC37A1P57057 533 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 SNTB1Q13884 538 aaKnown RBP19.36■□□□□ 0.69
VPS53-216ENST00000574029 ZNF267Q14586 743 aaPredicted RBP19.36■□□□□ 0.69
VPS53-216ENST00000574029 EBPQ15125 230 aaKnown RBP19.36■□□□□ 0.69
VPS53-216ENST00000574029 NTRK2Q16620 822 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 MRM1Q6IN84 353 aaKnown RBP19.36■□□□□ 0.69
VPS53-216ENST00000574029 RNF111Q6ZNA4 994 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 RAPH1Q70E73 1250 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 TBC1D1Q86TI0 1168 aaPredicted RBP19.36■□□□□ 0.69
VPS53-216ENST00000574029 CTAGE3PQ8IX95 158 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 GAL3ST4Q96RP7 486 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 MTERF1Q99551 399 aaKnown RBP19.36■□□□□ 0.69
VPS53-216ENST00000574029 DPH5Q9H2P9 285 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 CCM2LQ9NUG4 571 aaPredicted RBP19.36■□□□□ 0.69
VPS53-216ENST00000574029 ASB4Q9Y574 426 aa19.36■□□□□ 0.69
VPS53-216ENST00000574029 A0A0A6YYD5 115 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 ANKRD33BA6NCL7 494 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 FAM187AA6NFU0 413 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 WASHC1A8K0Z3 465 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 DIAPH2O60879 1101 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 TRIM3O75382 744 aaPredicted RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 LTA4HP09960 611 aaKnown RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 PTX3P26022 381 aaPredicted RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 CRABP2P29373 138 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 GALNSP34059 522 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 RPS13P62277 151 aaKnown RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 KBTBD12Q3ZCT8 623 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 LIPJQ5W064 366 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 ZNF572Q7Z3I7 529 aaPredicted RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 LIX1Q8N485 282 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 TEX9Q8N6V9 391 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 RELL2Q8NC24 303 aaPredicted RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 RIT1Q92963 219 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 POM121Q96HA1 1249 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 C16orf45Q96MC5 204 aaPredicted RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 JSRP1Q96MG2 331 aaPredicted RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 GPATCH1Q9BRR8 931 aaKnown RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 DOHHQ9BU89 302 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 RASSF1Q9NS23 344 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 LYARQ9NX58 379 aaKnown RBP19.35■□□□□ 0.69
VPS53-216ENST00000574029 GRHL1Q9NZI5 618 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 CRIM1Q9NZV1 1036 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 ST6GALNAC2Q9UJ37 374 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 PCDHGA11Q9Y5H2 935 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 NF1P21359 2839 aa19.35■□□□□ 0.69
VPS53-216ENST00000574029 NINQ8N4C6 2090 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 ZFHX3Q15911 3703 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 A0A1W2PR48 441 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 AHRRA9YTQ3 701 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 H0YIV9 168 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 TMPRSS11DO60235 418 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 OR10H2O60403 315 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 EEDO75530 441 aaKnown RBP19.34■□□□□ 0.69
VPS53-216ENST00000574029 LRATO95237 230 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 EPPINO95925 133 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 CEACAM8P31997 349 aaPredicted RBP19.34■□□□□ 0.69
VPS53-216ENST00000574029 BSGP35613 385 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 TRPC1P48995 793 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 DUSP8Q13202 625 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 SLMAPQ14BN4 828 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 TBCELQ5QJ74 424 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 TGIF2LYQ8IUE0 185 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 TAGAPQ8N103 731 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 PPM1NQ8N819 430 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 ZNF441Q8N8Z8 693 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 NAXEQ8NCW5 288 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 CHDHQ8NE62 594 aaPredicted RBP19.34■□□□□ 0.69
VPS53-216ENST00000574029 NXNL1Q96CM4 212 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 TRIM44Q96DX7 344 aaPredicted RBP19.34■□□□□ 0.69
VPS53-216ENST00000574029 SH3GL2Q99962 352 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 LIME1Q9H400 295 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 DDX31Q9H8H2 851 aaKnown RBP19.34■□□□□ 0.69
VPS53-216ENST00000574029 IKBKGQ9Y6K9 419 aa19.34■□□□□ 0.69
VPS53-216ENST00000574029 SLC35E2P0CK97 266 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 UQCRC1P31930 480 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 CRYZQ08257 329 aaKnown RBP19.33■□□□□ 0.68
VPS53-216ENST00000574029 CUL3Q13618 768 aa19.33■□□□□ 0.68
VPS53-216ENST00000574029 SETDB1Q15047 1291 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms