RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 MT-CO3P00414 261 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 SLC35E2P0CK97 266 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 CCL4P13236 92 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 OR4D2P58180 307 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 IGLV3-21P80748 117 aaPredicted RBP12.85□□□□□ -0.35
CCDC40-209ENST00000573474 ID2Q02363 134 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 STX4Q12846 297 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 FADDQ13158 208 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 SLC13A2Q13183 592 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 FLOT2Q14254 428 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 ERV3-1Q14264 604 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 RGNQ15493 299 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 FXNQ16595 210 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 ISXQ2M1V0 245 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 SAXO2Q658L1 398 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 CPZQ66K79 652 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 BHLHB9Q6PI77 547 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 C6orf120Q7Z4R8 191 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 DHFR2Q86XF0 187 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 PTRH1Q86Y79 214 aaKnown RBP12.85□□□□□ -0.35
CCDC40-209ENST00000573474 C10orf67Q8IYJ2 551 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 C7orf57Q8NEG2 295 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 OR9A2Q8NGT5 310 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 OR5AK3PQ8NH89 298 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 PNPT1Q8TCS8 783 aaKnown RBP12.85□□□□□ -0.35
CCDC40-209ENST00000573474 ELP4Q96EB1 424 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 REXO5Q96IC2 774 aaKnown RBP12.85□□□□□ -0.35
CCDC40-209ENST00000573474 RBCK1Q9BYM8 510 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 PCDHAC1Q9H158 963 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 C3orf14Q9HBI5 128 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 MKKSQ9NPJ1 570 aaPredicted RBP12.85□□□□□ -0.35
CCDC40-209ENST00000573474 SLC39A1Q9NY26 324 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 ACSL6Q9UKU0 697 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 MMACHCQ9Y4U1 282 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 SPTBP11277 2137 aa12.85□□□□□ -0.35
CCDC40-209ENST00000573474 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-209ENST00000573474 ELOVL7A1L3X0 281 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 PLOD2O00469 737 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 GSTA4O15217 222 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 EMC8O43402 210 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 ENTPD5O75356 428 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 GMNNO75496 209 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 SLITRK5O94991 958 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 BMP10O95393 424 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 ONECUT2O95948 504 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 C1QCP02747 245 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 ATP1B1P05026 303 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 IFI6P09912 130 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 CRATP43155 626 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 MAGEA8P43361 318 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 MVDP53602 400 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 DCDP81605 110 aaKnown RBP12.84□□□□□ -0.35
CCDC40-209ENST00000573474 PRR5P85299 388 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 RIPK1Q13546 671 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 CCNIQ14094 377 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 CYP51A1Q16850 503 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 NKAIN1Q4KMZ8 207 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.84□□□□□ -0.35
CCDC40-209ENST00000573474 ERICH5Q6P6B1 374 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 TMEM107Q6UX40 140 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 ANGPTL8Q6UXH0 198 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 PROSER1Q86XN7 944 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 RNF130Q86XS8 419 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 MICU2Q8IYU8 434 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 SLC38A9Q8NBW4 561 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 DEFB124Q8NES8 71 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 OR56A1Q8NGH5 318 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 JADE3Q92613 823 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 LIN37Q96GY3 246 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-209ENST00000573474 DEPDC7Q96QD5 511 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 CTRCQ99895 268 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 ALOXE3Q9BYJ1 711 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 TRIM15Q9C019 465 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 LANCL2Q9NS86 450 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 ZCCHC3Q9NUD5 404 aaKnown RBP12.84□□□□□ -0.35
CCDC40-209ENST00000573474 ACTR3BQ9P1U1 418 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 EGFL7Q9UHF1 273 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 USP22Q9UPT9 525 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 LOXL2Q9Y4K0 774 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 SNX13Q9Y5W8 968 aa12.84□□□□□ -0.35
CCDC40-209ENST00000573474 DLL1O00548 723 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 OR10H2O60403 315 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 CPNE3O75131 537 aaKnown RBP12.83□□□□□ -0.36
CCDC40-209ENST00000573474 CSO75390 466 aaKnown RBP12.83□□□□□ -0.36
CCDC40-209ENST00000573474 JRKO75564 520 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 CDC123O75794 336 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-209ENST00000573474 KCNK5O95279 499 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 NT5EP21589 574 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 RAB15P59190 212 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 BTG2P78543 158 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 TP53BP2Q13625 1128 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 SERTAD2Q14140 314 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 MAP7Q14244 749 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 LTB4RQ15722 352 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 COX20Q5RI15 118 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 GLYATQ6IB77 296 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 DHRS13Q6UX07 377 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 CEACAM20Q6UY09 585 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 RAB11FIP2Q7L804 512 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 SLCO6A1Q86UG4 719 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms