RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 REEP3Q6NUK4 255 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 TMEM71Q6P5X7 295 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 SLC23A3Q6PIS1 610 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ZC3H14Q6PJT7 736 aaKnown RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 TSSK4Q6SA08 328 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 DNAJC14Q6Y2X3 702 aaPredicted RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 ZNF793Q6ZN11 406 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ZBTB49Q6ZSB9 765 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 CBLL1Q75N03 491 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 GPR155Q7Z3F1 870 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 C6orf120Q7Z4R8 191 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 TRIM73Q86UV7 250 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 FAM20CQ8IXL6 584 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ZNF595Q8IYB9 648 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ZZZ3Q8IYH5 903 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 GPR135Q8IZ08 494 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 LRRC25Q8N386 305 aaPredicted RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 SLC25A45Q8N413 288 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 TMEM102Q8N9M5 508 aaPredicted RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 KCT2Q8NC54 265 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ZBTB44Q8NCP5 570 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 MIPOL1Q8TD10 442 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 SAP25Q8TEE9 199 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 JPH3Q8WXH2 748 aaPredicted RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 EXOSC8Q96B26 276 aaKnown RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 NRBF2Q96F24 287 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 NAF1Q96HR8 494 aaKnown RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 TGM7Q96PF1 710 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 NR1H4Q96RI1 486 aaPredicted RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 ZNF347Q96SE7 839 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 SORBS1Q9BX66 1292 aaKnown RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 EPS8L2Q9H6S3 715 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 TIMMDC1Q9NPL8 285 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 AGPAT4Q9NRZ5 378 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 EXD2Q9NVH0 621 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 SOHLH2Q9NX45 425 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 GIN1Q9NXP7 522 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 KCMF1Q9P0J7 381 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 NTMQ9P121 344 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 P2RX2Q9UBL9 471 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 FBXW2Q9UKT8 454 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 CES1P1Q9UKY3 287 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 RAB23Q9ULC3 237 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 RAB26Q9ULW5 256 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 CLCA2Q9UQC9 943 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ATG4BQ9Y4P1 393 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 NEUROG3Q9Y4Z2 214 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 SNX8Q9Y5X2 465 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 RNF215Q9Y6U7 377 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 KMT2BQ9UMN6 2715 aaPredicted RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 NUMA1Q14980 2115 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 MN1Q10571 1320 aaPredicted RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 HYKKA2RU49 373 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 EME2A4GXA9 379 aaPredicted RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 DYRK3O43781 588 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 CTNSO60931 367 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ERAL1O75616 437 aaKnown RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 AIFM1O95831 613 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 AK1P00568 194 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 SERPINA1P01009 418 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 NTRK1P04629 796 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 GUSBP08236 651 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 HBQ1P09105 142 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ANKRD34CP0C6C1 535 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 RNH1P13489 461 aaKnown RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 CERS1P27544 350 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ALDH4A1P30038 563 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 XKP51811 444 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 RPS6KA3P51812 740 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 CRISP3P54108 245 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ATXN3P54252 364 aaPredicted RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 MED21Q13503 144 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 TRA2AQ13595 282 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS39-213ENST00000570062 SCARB2Q14108 478 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 SERTAD2Q14140 314 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 SELPLGQ14242 412 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ZSWIM7Q19AV6 140 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 MPEG1Q2M385 716 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 RFX4Q33E94 735 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 PPP4R4Q6NUP7 873 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 CEACAM20Q6UY09 585 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 PIWIL3Q7Z3Z3 882 aaKnown RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 PDSS2Q86YH6 399 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 HIPK1Q86Z02 1210 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ZDHHC13Q8IUH4 622 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ARMC8Q8IUR7 673 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 SLC35F3Q8IY50 421 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 MAML2Q8IZL2 1156 aaPredicted RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 D2HGDHQ8N465 521 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 NETO1Q8TDF5 533 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 KLHL6Q8WZ60 621 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 NR4A3Q92570 626 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 CIDECQ96AQ7 238 aaPredicted RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 SLCO4A1Q96BD0 722 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ELP4Q96EB1 424 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 SLC47A1Q96FL8 570 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 SLC41A2Q96JW4 573 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 SLC35G5Q96KT7 338 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 NRTNQ99748 197 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 MAP3K3Q99759 626 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms