RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 LASP1Q14847 261 aaKnown RBP13.77□□□□□ -0.21
VPS35-210ENST00000568784 CDKN3Q16667 212 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 IDNKQ5T6J7 187 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 SDE2Q6IQ49 451 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 DOK4Q8TEW6 326 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 OVCA2Q8WZ82 227 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 ST6GAL2Q96JF0 529 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 PRAP1Q96NZ9 151 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 MVB12BQ9H7P6 319 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 DMRT3Q9NQL9 472 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 SLC9A8Q9Y2E8 581 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 SEMA3DO95025 777 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 EPHX1P07099 455 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 MAP2K3P46734 347 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 CCT3P49368 545 aaKnown RBP13.76□□□□□ -0.21
VPS35-210ENST00000568784 ST8SIA6P61647 398 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 DOC2BQ14184 412 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 CDKL4Q5MAI5 379 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 GAREM2Q75VX8 874 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 PHC2Q8IXK0 858 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 FAM20CQ8IXL6 584 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SLC7A13Q8TCU3 470 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SLC7A6Q92536 515 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 EGLN3Q9H6Z9 239 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 PCM1Q15154 2024 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 ZAR1LA6NP61 321 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SEMG1P04279 462 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 ARAFP10398 606 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 HOXB9P17482 250 aaPredicted RBP13.76□□□□□ -0.21
VPS35-210ENST00000568784 CBLP22681 906 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 VIPR1P32241 457 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SSR2P43308 183 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 RFX2P48378 723 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 GNG2P59768 71 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 PSPHP78330 225 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 KLHL12Q53G59 568 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 ZNF697Q5TEC3 545 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 CNIH2Q6PI25 160 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 ZNF730Q6ZMV8 503 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SLC30A8Q8IWU4 369 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 VWA5B2Q8N398 1253 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SLC43A3Q8NBI5 491 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 UFD1Q92890 307 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 ZNF558Q96NG5 402 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 FCRL4Q96PJ5 515 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SNX18Q96RF0 628 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 TTTY10Q9BZA0 68 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 ING3Q9NXR8 418 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 CNOT2Q9NZN8 540 aaKnown RBP13.76□□□□□ -0.21
VPS35-210ENST00000568784 TRAV6A0A075B6T7 132 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.76□□□□□ -0.21
VPS35-210ENST00000568784 C12orf71A8MTZ7 269 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SLC16A5O15375 505 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 OR1F1O43749 312 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 ADAP00813 363 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 RPL3P39023 403 aaKnown RBP13.76□□□□□ -0.21
VPS35-210ENST00000568784 ETV5P41161 510 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 ETV1P50549 477 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 TLE2Q04725 743 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 PUM1Q14671 1186 aaKnown RBP eCLIP13.76□□□□□ -0.21
VPS35-210ENST00000568784 ATCAYQ86WG3 371 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 C17orf64Q86WR6 236 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 KRT78Q8N1N4 520 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 FIBINQ8TAL6 211 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.76□□□□□ -0.216e-7■■■□□ 16.7
VPS35-210ENST00000568784 SUN5Q8TC36 379 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 RNFT2Q96EX2 444 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SIGLEC11Q96RL6 698 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 SPATA9Q9BWV2 254 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 CDCA4Q9BXL8 241 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 RETREG1Q9H6L5 497 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 TMEM39AQ9NV64 488 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 NKIRAS2Q9NYR9 191 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 WNT6Q9Y6F9 365 aa13.76□□□□□ -0.21
VPS35-210ENST00000568784 HMX3A6NHT5 357 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 CPSF4LA6NMK7 179 aaKnown RBP13.75□□□□□ -0.21
VPS35-210ENST00000568784 AKR7A2O43488 359 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 INSL4Q14641 139 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 PRAMEF14Q5SWL7 426 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 PRAMEF13Q5VWM6 474 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 OR4C15Q8NGM1 316 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 BTN2A2Q8WVV5 523 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 MGAT4BQ9UQ53 548 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 ZSCAN5BA6NJL1 495 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 ZNF670-ZNF695F2Z2N8 137 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 PRKRAO75569 313 aaKnown RBP13.75□□□□□ -0.21
VPS35-210ENST00000568784 POP7O75817 140 aaKnown RBP13.75□□□□□ -0.21
VPS35-210ENST00000568784 HSD3B1P14060 373 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 HSD3B2P26439 372 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 SREBF2Q12772 1141 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 GPR50Q13585 617 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 ZNF79Q15937 498 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 FAM26DQ5JW98 314 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 LY6G5CQ5SRR4 150 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 PODNL1Q6PEZ8 512 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 ZNF557Q8N988 423 aaPredicted RBP13.75□□□□□ -0.21
VPS35-210ENST00000568784 AP3S1Q92572 193 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 RC3H2Q9HBD1 1191 aaKnown RBP13.75□□□□□ -0.21
VPS35-210ENST00000568784 MCUBQ9NWR8 336 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 HCFC1R1Q9NWW0 138 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms