RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FAM76AQ8TAV0 307 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 C16orf78Q8WTQ4 265 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 DAZLQ92904 295 aaKnown RBP16.11■□□□□ 0.17
CLN3-217ENST00000565354 ANKRD9Q96BM1 317 aaPredicted RBP16.11■□□□□ 0.17
CLN3-217ENST00000565354 TM4SF18Q96CE8 201 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 RBM18Q96H35 190 aaKnown RBP16.11■□□□□ 0.17
CLN3-217ENST00000565354 IMMP1LQ96LU5 166 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 PPP3R2Q96LZ3 170 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 SMAD5Q99717 465 aaKnown RBP16.11■□□□□ 0.17
CLN3-217ENST00000565354 PELOQ9BRX2 385 aaKnown RBP16.11■□□□□ 0.17
CLN3-217ENST00000565354 KCNK13Q9HB14 408 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 INTS9Q9NV88 658 aaKnown RBP16.11■□□□□ 0.17
CLN3-217ENST00000565354 PSME2Q9UL46 239 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 DLGAP4Q9Y2H0 992 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 PCDHA9Q9Y5H5 950 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 CLCA3PQ9Y6N3 262 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 TGFBR3LH3BV60 316 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 ERAL1O75616 437 aaKnown RBP16.1■□□□□ 0.17
CLN3-217ENST00000565354 GPR75O95800 540 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 CELA2AP08217 269 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 IL3P08700 152 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 PRR35P0CG20 571 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 ALOX15P16050 662 aaPredicted RBP16.1■□□□□ 0.17
CLN3-217ENST00000565354 PRPH2P23942 346 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 RIPPLY3P57055 190 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 SOX8P57073 446 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 SLC26A5P58743 744 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 Q0VFX4 171 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 ELAVL1Q15717 326 aaKnown RBP16.1■□□□□ 0.17
CLN3-217ENST00000565354 ATP6AP1LQ52LC2 224 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 AGAP7PQ5VUJ5 663 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 NOXRED1Q6NXP6 359 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 GALNT18Q6P9A2 607 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 Q6ZSR9 355 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 SLC34A3Q8N130 599 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 OR4K14Q8NGD5 310 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 OR2T11Q8NH01 316 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 M1APQ8TC57 530 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 ZNF75CPQ92670 426 aaPredicted RBP16.1■□□□□ 0.17
CLN3-217ENST00000565354 TUBGCP3Q96CW5 907 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 PPP1R36Q96LQ0 422 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 AGAP4Q96P64 663 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 SORT1Q99523 831 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 WDR77Q9BQA1 342 aaPredicted RBP16.1■□□□□ 0.17
CLN3-217ENST00000565354 C20orf27Q9GZN8 174 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 ASF1BQ9NVP2 202 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 SIRT5Q9NXA8 310 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 TMED5Q9Y3A6 229 aa16.1■□□□□ 0.17
CLN3-217ENST00000565354 CROCCQ5TZA2 2017 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 ATP6AP2A0A1C7CYW4 349 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 ANKUB1A6NFN9 424 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 A8MUI8 341 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 LSM1O15116 133 aaKnown RBP16.09■□□□□ 0.17
CLN3-217ENST00000565354 PGRMC2O15173 223 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 ATP8B1O43520 1251 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 PEX11AO75192 247 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 ATP6AP2O75787 350 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 ITGAMP11215 1152 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 DRD2P14416 443 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 MAPK1P28482 360 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 STT3AP46977 705 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 C2orf80Q0P641 193 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 PLEKHN1Q494U1 663 aaPredicted RBP16.09■□□□□ 0.17
CLN3-217ENST00000565354 VWA5B1Q5TIE3 1220 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 CISD2Q8N5K1 135 aaKnown RBP16.09■□□□□ 0.17
CLN3-217ENST00000565354 SIRT6Q8N6T7 355 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 OR14A16Q8NHC5 309 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 DNAJB14Q8TBM8 379 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 BRIX1Q8TDN6 353 aaKnown RBP16.09■□□□□ 0.17
CLN3-217ENST00000565354 TM9SF4Q92544 642 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 KLHL29Q96CT2 875 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 GIMAP4Q9NUV9 329 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 PNPOQ9NVS9 261 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 PTGFRNQ9P2B2 879 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 VTI1BQ9UEU0 232 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 CCL27Q9Y4X3 112 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 ZNF780BQ9Y6R6 833 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 SVILO95425 2214 aa16.09■□□□□ 0.17
CLN3-217ENST00000565354 SETD2Q9BYW2 2564 aaPredicted RBP16.08■□□□□ 0.17
CLN3-217ENST00000565354 C17orf105B2RV13 164 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 NPIPB8E9PQR5 432 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 KLF11O14901 512 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 KITP10721 976 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 TERF2Q15554 542 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 XKR7Q5GH72 579 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 SLC48A1Q6P1K1 146 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 CRLF3Q8IUI8 442 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 ST13P4Q8IZP2 240 aaPredicted RBP16.08■□□□□ 0.16
CLN3-217ENST00000565354 MMP21Q8N119 569 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 ARFGAP2Q8N6H7 521 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 FNDC5Q8NAU1 212 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 B3GNT7Q8NFL0 401 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 UCN3Q969E3 161 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 ART5Q96L15 291 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 EPS8L2Q9H6S3 715 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 ZNF552Q9H707 407 aaPredicted RBP16.08■□□□□ 0.16
CLN3-217ENST00000565354 MMP25Q9NPA2 562 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 MED4Q9NPJ6 270 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 MIEF1Q9NQG6 463 aa16.08■□□□□ 0.16
CLN3-217ENST00000565354 C5AR2Q9P296 337 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms