RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 KRT78Q8N1N4 520 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 UCN3Q969E3 161 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 PPWD1Q96BP3 646 aaKnown RBP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 RBM18Q96H35 190 aaKnown RBP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 ZC3HAV1LQ96H79 300 aaKnown RBP6.68□□□□□ -1.34
VPS4A-203ENST00000564399 ART5Q96L15 291 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 RILPQ96NA2 401 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 EGFL8Q99944 293 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 MAPKAP1Q9BPZ7 522 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 TUBA1CQ9BQE3 449 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 PIGQQ9BRB3 760 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 UBQLN3Q9H347 655 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 CXorf56Q9H5V9 222 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 LYRM4Q9HD34 91 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 PACSIN3Q9UKS6 424 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 C15orf41Q9Y2V0 281 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 FREM1Q5H8C1 2179 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 CADP27708 2225 aa6.68□□□□□ -1.34
VPS4A-203ENST00000564399 A0A087X1B8 175 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ANKRD33BA6NCL7 494 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 CAPN14A8MX76 684 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 GOLGA8MH3BSY2 632 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 HRKO00198 91 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 CDC7O00311 574 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 GNB5O14775 395 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 MSTNO14793 375 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 TLX2O43763 284 aaPredicted RBP6.67□□□□□ -1.34
VPS4A-203ENST00000564399 FGF17O60258 216 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 WDR47O94967 919 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 SNX4O95219 450 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ACTL6AO96019 429 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 IGKV3-11P04433 115 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 CPN2P22792 545 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 GSTM2P28161 218 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 SOX18P35713 384 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 CD79BP40259 229 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 STT3AP46977 705 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 KCNJ5P48544 419 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 PGGT1BP53609 377 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 FBXW4P57775 412 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 HERVK_113P63132 956 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ERVK-8P63133 956 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 EEF1A1P68104 462 aaKnown RBP6.67□□□□□ -1.34
VPS4A-203ENST00000564399 PLIN5Q00G26 463 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 GAB1Q13480 694 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ZNF267Q14586 743 aaPredicted RBP6.67□□□□□ -1.34
VPS4A-203ENST00000564399 RPS6KA2Q15349 733 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ADPRMQ3LIE5 342 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 EEF1A1P5Q5VTE0 462 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ANKRD22Q5VYY1 191 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 DRICH1Q6PGQ1 229 aaPredicted RBP6.67□□□□□ -1.34
VPS4A-203ENST00000564399 SCIMPQ6UWF3 145 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ENPP6Q6UWR7 440 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 RAD9BQ6WBX8 426 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 RNF111Q6ZNA4 994 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 SLCO4C1Q6ZQN7 724 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 HIPK1Q86Z02 1210 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 GRAMD2AQ8IUY3 354 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 RNF214Q8ND24 703 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 C7orf57Q8NEG2 295 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 WNT2BQ93097 391 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ANKRD9Q96BM1 317 aaPredicted RBP6.67□□□□□ -1.34
VPS4A-203ENST00000564399 FBXL20Q96IG2 436 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 SERPINB12Q96P63 405 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 HS3ST6Q96QI5 342 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 F2RL3Q96RI0 385 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 KRT12Q99456 494 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ERVK-6Q9BXR3 956 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 TRIM5Q9C035 493 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ROGDIQ9GZN7 287 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 XAB2Q9HCS7 855 aaKnown RBP6.67□□□□□ -1.34
VPS4A-203ENST00000564399 PRDM7Q9NQW5 492 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 TEX10Q9NXF1 929 aaPredicted RBP6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ADGRE2Q9UHX3 823 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 ERVK-19Q9WJR5 959 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 WIF1Q9Y5W5 379 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 IKBKGQ9Y6K9 419 aa6.67□□□□□ -1.34
VPS4A-203ENST00000564399 C2orf92A0A1B0GVN3 265 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 RTCAO00442 366 aaKnown RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 CLGNO14967 610 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 OR10H2O60403 315 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 SH3BGRLO75368 114 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 MLNP12872 115 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 POU2F1P14859 743 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 CPN1P15169 458 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 ATP5A1P25705 553 aaKnown RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 GDF5P43026 501 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 KCNC1P48547 511 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 TMED10P49755 219 aaKnown RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 RPP38P78345 283 aaKnown RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 CAPRIN1Q14444 709 aaKnown RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 SETDB1Q15047 1291 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 CLEC12BQ2HXU8 276 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 AP5B1Q2VPB7 878 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 KBTBD12Q3ZCT8 623 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 FNDC7Q5VTL7 733 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 HLA-DQA1Q5Y7H0 255 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 TIGD3Q6B0B8 471 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 SBSNQ6UWP8 590 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 ANGPTL8Q6UXH0 198 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms