RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 NEIL3Q8TAT5 605 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 UBTD2Q8WUN7 234 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 UCN3Q969E3 161 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 GPATCH1Q9BRR8 931 aaKnown RBP15.5■□□□□ 0.07
CLN3-211ENST00000564091 ERP44Q9BS26 406 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 DOHHQ9BU89 302 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 WWTR1Q9GZV5 400 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 NMRAL1Q9HBL8 299 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 ACKR4Q9NPB9 350 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 DMRT3Q9NQL9 472 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLN3-211ENST00000564091 ZNF358Q9NW07 568 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 CRIM1Q9NZV1 1036 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 CNIH4Q9P003 139 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 PHF11Q9UIL8 331 aa15.5■□□□□ 0.07
CLN3-211ENST00000564091 A0A1W2PR48 441 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 EIF3HO15372 352 aaKnown RBP eCLIP15.49■□□□□ 0.07
CLN3-211ENST00000564091 GPR75O95800 540 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 MTHFD2P13995 350 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 EPB42P16452 691 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 SLC37A1P57057 533 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 EBPQ15125 230 aaKnown RBP15.49■□□□□ 0.07
CLN3-211ENST00000564091 KBTBD12Q3ZCT8 623 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 RNF111Q6ZNA4 994 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 TBC1D1Q86TI0 1168 aaPredicted RBP15.49■□□□□ 0.07
CLN3-211ENST00000564091 LIX1Q8N485 282 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 RELL2Q8NC24 303 aaPredicted RBP15.49■□□□□ 0.07
CLN3-211ENST00000564091 NAXEQ8NCW5 288 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 RIT1Q92963 219 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 NXNL1Q96CM4 212 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 FOXC2Q99958 501 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 CENPKQ9BS16 269 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 ZNF717Q9BY31 904 aaPredicted RBP15.49■□□□□ 0.07
CLN3-211ENST00000564091 CLEC4MQ9H2X3 399 aaPredicted RBP15.49■□□□□ 0.07
CLN3-211ENST00000564091 WHRNQ9P202 907 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 ADGRE2Q9UHX3 823 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 ASB4Q9Y574 426 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 ANGPTL3Q9Y5C1 460 aa15.49■□□□□ 0.07
CLN3-211ENST00000564091 ANKHD1Q8IWZ3 2542 aaKnown RBP15.49■□□□□ 0.07
CLN3-211ENST00000564091 ABCA4P78363 2273 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 ACANP16112 2415 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 C15orf38-AP3S2A0A0A6YYH1 394 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 A0A1W2PS29 197 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 LRRC14BA6NHZ5 514 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 HSPB2A8KAH6 182 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 SYT5O00445 386 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 TMPRSS11DO60235 418 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 TRAPPC6AO75865 159 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 CLPSP04118 112 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 LTA4HP09960 611 aaKnown RBP15.48■□□□□ 0.07
CLN3-211ENST00000564091 BMP5P22003 454 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 GDF1P27539 372 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 CRABP2P29373 138 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 BSGP35613 385 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 BUD31P41223 144 aaPredicted RBP15.48■□□□□ 0.07
CLN3-211ENST00000564091 PIK3CBP42338 1070 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 TBL3Q12788 808 aaKnown RBP15.48■□□□□ 0.07
CLN3-211ENST00000564091 DUSP8Q13202 625 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 CEBPEQ15744 281 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 HSPB2Q16082 182 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 SPRED3Q2MJR0 410 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 BICRALQ6AI39 1079 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 MRM1Q6IN84 353 aaKnown RBP15.48■□□□□ 0.07
CLN3-211ENST00000564091 DND1Q8IYX4 353 aaKnown RBP15.48■□□□□ 0.07
CLN3-211ENST00000564091 TNIP2Q8NFZ5 429 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 KCTD4Q8WVF5 259 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 DIO2Q92813 273 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 POM121Q96HA1 1249 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 CXXC4Q9H2H0 198 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 ACTR8Q9H981 624 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 RASSF1Q9NS23 344 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 QPCTLQ9NXS2 382 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 GRHL1Q9NZI5 618 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 B4GALT7Q9UBV7 327 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 ST6GALNAC2Q9UJ37 374 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 PLEKHA6Q9Y2H5 1048 aa15.48■□□□□ 0.07
CLN3-211ENST00000564091 A0A0A6YYD5 115 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 FAM187AA6NFU0 413 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 RAD51CO43502 376 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 TRIM3O75382 744 aaPredicted RBP15.47■□□□□ 0.07
CLN3-211ENST00000564091 GBAP04062 536 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 PTX3P26022 381 aaPredicted RBP15.47■□□□□ 0.07
CLN3-211ENST00000564091 SSTR4P31391 388 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 NEK2P51955 445 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 FBXW4P57775 412 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 IRF9Q00978 393 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 NTRK2Q16620 822 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 CPSF6Q16630 551 aaKnown RBP eCLIP15.47■□□□□ 0.07
CLN3-211ENST00000564091 ACSF3Q4G176 576 aaPredicted RBP15.47■□□□□ 0.07
CLN3-211ENST00000564091 TAGAPQ8N103 731 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 FBF1Q8TES7 1133 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 NINJ1Q92982 152 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 TIMP4Q99727 224 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 PELOQ9BRX2 385 aaKnown RBP15.47■□□□□ 0.07
CLN3-211ENST00000564091 RNF14Q9UBS8 474 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 PCDHGB3Q9Y5G1 929 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 PCDHGA11Q9Y5H2 935 aa15.47■□□□□ 0.07
CLN3-211ENST00000564091 NIPBLQ6KC79 2804 aaeCLIP15.47■□□□□ 0.07
CLN3-211ENST00000564091 C2orf92A0A1B0GVN3 265 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 FAM221AA4D161 298 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms