RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 METTL2AQ96IZ6 378 aaKnown RBP9.13□□□□□ -0.95
CLK3-208ENST00000562626 THOC3Q96J01 351 aaKnown RBP9.13□□□□□ -0.95
CLK3-208ENST00000562626 ZNF317Q96PQ6 595 aaPredicted RBP9.13□□□□□ -0.95
CLK3-208ENST00000562626 TUBB6Q9BUF5 446 aa9.13□□□□□ -0.95
CLK3-208ENST00000562626 CCDC134Q9H6E4 229 aa9.13□□□□□ -0.95
CLK3-208ENST00000562626 LIN28AQ9H9Z2 209 aaKnown RBP9.13□□□□□ -0.95
CLK3-208ENST00000562626 WDR41Q9HAD4 459 aa9.13□□□□□ -0.95
CLK3-208ENST00000562626 ADAP2Q9NPF8 381 aa9.13□□□□□ -0.95
CLK3-208ENST00000562626 RIC8BQ9NVN3 520 aa9.13□□□□□ -0.95
CLK3-208ENST00000562626 ASIC5Q9NY37 505 aa9.13□□□□□ -0.95
CLK3-208ENST00000562626 UTS2RQ9UKP6 389 aa9.13□□□□□ -0.95
CLK3-208ENST00000562626 G3BP2Q9UN86 482 aaKnown RBP9.13□□□□□ -0.95
CLK3-208ENST00000562626 TLN1Q9Y490 2541 aaKnown RBP9.13□□□□□ -0.95
CLK3-208ENST00000562626 SHANK1Q9Y566 2161 aa9.13□□□□□ -0.95
CLK3-208ENST00000562626 BLACEA4D250 179 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 TMEM200CA6NKL6 621 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 MYO1GB0I1T2 1018 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 SCAMP2O15127 329 aaKnown RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 ZNF354AO60765 605 aaPredicted RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 IGKV3-11P04433 115 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 IFNA16P05015 189 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 ITGB2P05107 769 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 LAMP1P11279 417 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 DRD2P14416 443 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 S1PR1P21453 382 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 PIK3R1P27986 724 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 SSTR4P31391 388 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 CD97P48960 835 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 AQP5P55064 265 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 SOX8P57073 446 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 UFM1P61960 85 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 PHC1P78364 1004 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 MRPS35P82673 323 aaKnown RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 ACTN3Q08043 901 aaPredicted RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 EXOSC7Q15024 291 aaKnown RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 ELAVL1Q15717 326 aaKnown RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 CEBPEQ15744 281 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 COLEC12Q5KU26 742 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 PLAG1Q6DJT9 500 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 CCDC116Q8IYX3 515 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 ST13P4Q8IZP2 240 aaPredicted RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 SIRT6Q8N6T7 355 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 TMEM102Q8N9M5 508 aaPredicted RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 B3GNT7Q8NFL0 401 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 OR4K14Q8NGD5 310 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 OR9A2Q8NGT5 310 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 SLC2A12Q8TD20 617 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 ACTRT2Q8TDY3 377 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 ELP5Q8TE02 316 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 APOBEC4Q8WW27 367 aaKnown RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 NACC2Q96BF6 587 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 CATSPER2Q96P56 530 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 IP6K3Q96PC2 410 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 DGAT2Q96PD7 388 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 LPAR4Q99677 370 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 OR8D2Q9GZM6 311 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 REEP4Q9H6H4 257 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 ZNF552Q9H707 407 aaPredicted RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 CXorf21Q9HAI6 301 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 NPHS2Q9NP85 383 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 ATP13A2Q9NQ11 1180 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 SLC35C2Q9NQQ7 365 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 AIG1Q9NVV5 245 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 GPR83Q9NYM4 423 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 MAT2BQ9NZL9 334 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 C19orf25Q9UFG5 118 aaPredicted RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 DCTN4Q9UJW0 460 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 PPIEQ9UNP9 301 aaKnown RBP9.12□□□□□ -0.95
CLK3-208ENST00000562626 ERVK-11Q9UQG0 969 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 ERVK-19Q9WJR5 959 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 DTX4Q9Y2E6 619 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 TMED5Q9Y3A6 229 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 CSAG2Q9Y5P2 127 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 GPR45Q9Y5Y3 372 aa9.12□□□□□ -0.95
CLK3-208ENST00000562626 TRPC5OSA6NMA1 111 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 E9PBE3 544 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 KLHL41O60662 606 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 GUCY1B2O75343 617 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 F10P00742 488 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 C1QCP02747 245 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 SERPINA7P05543 415 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 SLC35E2P0CK97 266 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 PRPS2P11908 318 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 PORP16435 677 aaPredicted RBP9.11□□□□□ -0.95
CLK3-208ENST00000562626 ITGA3P26006 1051 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 SOX11P35716 441 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 PGDP52209 483 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 SEC24CP53992 1094 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 RRADP55042 308 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 WNT3P56703 355 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 CLDN8P56748 225 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 PLIN5Q00G26 463 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 AIMP2Q13155 320 aaKnown RBP9.11□□□□□ -0.95
CLK3-208ENST00000562626 SERTAD2Q14140 314 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 ZNF267Q14586 743 aaPredicted RBP9.11□□□□□ -0.95
CLK3-208ENST00000562626 HEPACAMQ14CZ8 416 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 SMU1Q2TAY7 513 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 PRICKLE4Q2TBC4 344 aa9.11□□□□□ -0.95
CLK3-208ENST00000562626 TRMT12Q53H54 448 aaKnown RBP9.11□□□□□ -0.95
CLK3-208ENST00000562626 ZNF628Q5EBL2 1059 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms