RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 FRG2BQ96QU4 278 aa16.36■□□□□ 0.21
HDDC3-205ENST00000559898 PNPLA3Q9NST1 481 aa16.36■□□□□ 0.21
HDDC3-205ENST00000559898 LYARQ9NX58 379 aaKnown RBP16.36■□□□□ 0.21
HDDC3-205ENST00000559898 MS4A12Q9NXJ0 267 aa16.36■□□□□ 0.21
HDDC3-205ENST00000559898 COPS7AQ9UBW8 275 aa16.36■□□□□ 0.21
HDDC3-205ENST00000559898 ZNF180Q9UJW8 692 aa16.36■□□□□ 0.21
HDDC3-205ENST00000559898 PPT2Q9UMR5 302 aa16.36■□□□□ 0.21
HDDC3-205ENST00000559898 DTX4Q9Y2E6 619 aa16.36■□□□□ 0.21
HDDC3-205ENST00000559898 ABCA12Q86UK0 2595 aa16.36■□□□□ 0.21
HDDC3-205ENST00000559898 HCFC1P51610 2035 aa16.36■□□□□ 0.21
HDDC3-205ENST00000559898 PHF3Q92576 2039 aaKnown RBP16.36■□□□□ 0.21
HDDC3-205ENST00000559898 NPIPA2E9PIF3 369 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 E9PLN8 166 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 NPIPA3F8WFD2 350 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 GOLGA8RI6L899 631 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 SMIM24O75264 130 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 OR4F21O95013 312 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 CLDN14O95500 239 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 RHOXF2BP0C7M4 288 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 COX7A2P14406 83 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 TNFRSF8P28908 595 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 BUD31P41223 144 aaPredicted RBP16.35■□□□□ 0.21
HDDC3-205ENST00000559898 GALNT1Q10472 559 aaPredicted RBP16.35■□□□□ 0.21
HDDC3-205ENST00000559898 DUSP8Q13202 625 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 EBPQ15125 230 aaKnown RBP16.35■□□□□ 0.21
HDDC3-205ENST00000559898 MPEG1Q2M385 716 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 SPRED3Q2MJR0 410 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 TEX35Q5T0J7 233 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 BICRALQ6AI39 1079 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 TTC19Q6DKK2 380 aaPredicted RBP16.35■□□□□ 0.21
HDDC3-205ENST00000559898 DESI1Q6ICB0 168 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 OR10G3Q8NGC4 313 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 OR5L2Q8NGL0 311 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 OR5M3Q8NGP4 307 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 NUBPLQ8TB37 319 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 TRPC4APQ8TEL6 797 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 RIT1Q92963 219 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 SDCCAG3Q96C92 435 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 REPS1Q96D71 796 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 SERPINI1Q99574 410 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 VKORC1Q9BQB6 163 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 MRPL57Q9BQC6 102 aaKnown RBP16.35■□□□□ 0.21
HDDC3-205ENST00000559898 RHOXF2Q9BQY4 288 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 TRIM8Q9BZR9 551 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 WWTR1Q9GZV5 400 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 MRPL46Q9H2W6 279 aaKnown RBP16.35■□□□□ 0.21
HDDC3-205ENST00000559898 SACM1LQ9NTJ5 587 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 PSD3Q9NYI0 1048 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 IKBKGQ9Y6K9 419 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 AKAP9Q99996 3911 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 ADGRG4Q8IZF6 3080 aa16.35■□□□□ 0.21
HDDC3-205ENST00000559898 EXOC1LA0A1B0GW35 172 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 ATP6AP2A0A1C7CYW4 349 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 RIPK2O43353 540 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 OR10H2O60403 315 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 DLX3O60479 287 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 ATP6AP2O75787 350 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 KRT38O76015 456 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 SNRPAP09012 282 aaKnown RBP16.34■□□□□ 0.21
HDDC3-205ENST00000559898 COL6A2P12110 1019 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 ENDOUP21128 410 aaKnown RBP16.34■□□□□ 0.21
HDDC3-205ENST00000559898 TLX1P31314 330 aaPredicted RBP16.34■□□□□ 0.21
HDDC3-205ENST00000559898 HTR6P50406 440 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 SMSP52788 366 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 KRTAP10-9P60411 292 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 PHEXP78562 749 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 TSNAXIP1Q2TAA8 658 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 GLE1Q53GS7 698 aaKnown RBP16.34■□□□□ 0.21
HDDC3-205ENST00000559898 NDUFAF5Q5TEU4 345 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 FAM111BQ6SJ93 734 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 OPN5Q6U736 354 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 RNF111Q6ZNA4 994 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 COMMD6Q7Z4G1 85 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 CCDC71Q8IV32 467 aaPredicted RBP16.34■□□□□ 0.21
HDDC3-205ENST00000559898 METTL4Q8N3J2 472 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 ZNF441Q8N8Z8 693 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 MNS1Q8NEH6 495 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 TMEM237Q96Q45 408 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 FAM173AQ9BQD7 235 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 CENPKQ9BS16 269 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 TXLNGYQ9BZA5 131 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 UCK2Q9BZX2 261 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 CXorf21Q9HAI6 301 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 CES1P1Q9UKY3 287 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 SLC12A4Q9UP95 1085 aa16.34■□□□□ 0.21
HDDC3-205ENST00000559898 CHCHD2Q9Y6H1 151 aaPredicted RBP16.34■□□□□ 0.21
HDDC3-205ENST00000559898 NKX2-6A6NCS4 301 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 LRRC3CA6NJW4 275 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 NME6O75414 186 aaPredicted RBP16.33■□□□□ 0.2
HDDC3-205ENST00000559898 SEMA3DO95025 777 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 SLC35E2P0CK97 266 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 AGAP20933 346 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 S1PR1P21453 382 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 HSD17B3P37058 310 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 ARFIP1P53367 373 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 NUP107P57740 925 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 TBL3Q12788 808 aaKnown RBP16.33■□□□□ 0.2
HDDC3-205ENST00000559898 GGTA1PQ4G0N0 100 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 GXYLT1Q4G148 440 aa16.33■□□□□ 0.2
HDDC3-205ENST00000559898 RTL6Q6ICC9 239 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms