RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 DUSP8Q13202 625 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 SNTB1Q13884 538 aaKnown RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 FASTKD3Q14CZ7 662 aaKnown RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 DAZAP2Q15038 168 aaPredicted RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 NTRK2Q16620 822 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 FLYWCH1Q4VC44 716 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 GRTP1Q5TC63 336 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 HLA-DQA1Q5Y7H0 255 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 C18orf63Q68DL7 685 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 GRHL2Q6ISB3 625 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 LYPD8Q6UX82 237 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 CAPN12Q6ZSI9 719 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 C3orf62Q6ZUJ4 267 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 RAPH1Q70E73 1250 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 TBC1D1Q86TI0 1168 aaPredicted RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 ISCA2Q86U28 154 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 PACS2Q86VP3 889 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 CDC20BQ86Y33 519 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 LACC1Q8IV20 430 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 ZCCHC7Q8N3Z6 543 aaKnown RBP8.43□□□□□ -1.06
HDDC3-204ENST00000559834 OR10G3Q8NGC4 313 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 DIO2Q92813 273 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 EXT2Q93063 718 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 TP53INP1Q96A56 240 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 REPS1Q96D71 796 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 MBD6Q96DN6 1003 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 HSPBAP1Q96EW2 488 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 ZNF597Q96LX8 424 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 ALPK1Q96QP1 1244 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 GAL3ST4Q96RP7 486 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 GPR22Q99680 433 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 RBBP8Q99708 897 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 PROK2Q9HC23 129 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 SMYD2Q9NRG4 433 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 NUDT4Q9NZJ9 180 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 SNX24Q9Y343 169 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 TSC22D4Q9Y3Q8 395 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 PCDHGA11Q9Y5H2 935 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 IKBKGQ9Y6K9 419 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 MTORP42345 2549 aa8.43□□□□□ -1.06
HDDC3-204ENST00000559834 EML6Q6ZMW3 1958 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 C2orf92A0A1B0GVN3 265 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 LRRC3CA6NJW4 275 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SYCE1LA8MT33 242 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 CXorf49A8MYA2 514 aaPredicted RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SUPT3HB4E1H0 165 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 TP73O15350 636 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 CDH16O75309 829 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 TRIM3O75382 744 aaPredicted RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SUPT3HO75486 399 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 PIAS1O75925 651 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 GOSR1O95249 250 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 LTA4HP09960 611 aaKnown RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SLC35E2BP0CK96 405 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SLC35E2P0CK97 266 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 EPXP11678 715 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 CRABP2P29373 138 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SSTR1P30872 391 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 GCKP35557 465 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 MASP1P48740 699 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 TMED10P49755 219 aaKnown RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 NRG3P56975 720 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SLC37A1P57057 533 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 HERVK_113P63132 956 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 ERVK-8P63133 956 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 TNFRSF17Q02223 184 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 DDX39BQ13838 428 aaKnown RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 ZKSCAN8Q15776 578 aaPredicted RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SPRED3Q2MJR0 410 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 FBXL19-AS1Q494R0 122 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 LIPJQ5W064 366 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 ADGRD1Q6QNK2 874 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 CYP20A1Q6UW02 462 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 DGAT2L6Q6ZPD8 337 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SEM1Q6ZVN7 128 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 MYLK4Q86YV6 388 aaPredicted RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 CREG2Q8IUH2 290 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 CTAGE3PQ8IX95 158 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 TNIP2Q8NFZ5 429 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 HUS1BQ8NHY5 278 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SECISBP2Q96T21 854 aaKnown RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 TIMP4Q99727 224 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SH3GL2Q99962 352 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 ERVK-6Q9BXR3 956 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 WWTR1Q9GZV5 400 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SLC6A15Q9H2J7 730 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 LIME1Q9H400 295 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 ALG9Q9H6U8 611 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SAYSD1Q9NPB0 183 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SNX15Q9NRS6 342 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 LYARQ9NX58 379 aaKnown RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 TRMT1Q9NXH9 659 aaKnown RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 PSD3Q9NYI0 1048 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 RNF14Q9UBS8 474 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 CNOT11Q9UKZ1 510 aaKnown RBP8.42□□□□□ -1.06
HDDC3-204ENST00000559834 ERVK-19Q9WJR5 959 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 PLEKHA6Q9Y2H5 1048 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 NPFFR2Q9Y5X5 522 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 SAR1BQ9Y6B6 198 aa8.42□□□□□ -1.06
HDDC3-204ENST00000559834 NINQ8N4C6 2090 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms