RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TMED5Q9Y3A6 229 aa8.1□□□□□ -1.11
USP3-208ENST00000558285 RNF11Q9Y3C5 154 aa8.1□□□□□ -1.11
USP3-208ENST00000558285 ANKRD12Q6UB98 2062 aa8.1□□□□□ -1.11
USP3-208ENST00000558285 FASNP49327 2511 aaKnown RBP8.1□□□□□ -1.11
USP3-208ENST00000558285 TRBV11-1A0A0K0K1C0 115 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 TLDC2A0PJX2 215 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ANKUB1A6NFN9 424 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 SMIM23A6NLE4 172 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 GABRR3A8MPY1 467 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 C17orf105B2RV13 164 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 PEX11AO75192 247 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ESRRBO95718 433 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 FAM58BPP0C7Q3 252 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 CHN1P15882 459 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ZNF24P17028 368 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 EPORP19235 508 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 CD22P20273 847 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 GALNSP34059 522 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 STT3AP46977 705 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 SSR4P51571 173 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 TRA2BP62995 288 aaKnown RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 BTG2P78543 158 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 Q0VFX4 171 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 RUNX2Q13950 521 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 OR1C1Q15619 314 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 IMPG1Q17R60 797 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 KRTCAP3Q53RY4 240 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 HLA-DQA1Q5Y7H0 255 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 OPN5Q6U736 354 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ZYG11AQ6WRX3 759 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 SLC29A4Q7RTT9 530 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 VN1R5Q7Z5H4 357 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 CUZD1Q86UP6 607 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 LRRC34Q8IZ02 419 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ST13P4Q8IZP2 240 aaPredicted RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 BEST3Q8N1M1 668 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 CCNYL1Q8N7R7 359 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 PLPP7Q8NBV4 271 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ST6GALNAC3Q8NDV1 305 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 OR4F6Q8NGB9 312 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ELP5Q8TE02 316 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 FAR1Q8WVX9 515 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 PSMF1Q92530 271 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 SNRNP40Q96DI7 357 aaKnown RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 L3HYPDHQ96EM0 354 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ELAC2Q9BQ52 826 aaKnown RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 CDCP1Q9H5V8 836 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 LUZP4Q9P127 313 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 LRFN1Q9P244 771 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 VPS29Q9UBQ0 182 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 PPIEQ9UNP9 301 aaKnown RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 WBP11Q9Y2W2 641 aaKnown RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 A0A1B0GUH1 482 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 SMIM31A0A1B0GVY4 71 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 C1orf226A1L170 272 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 OR6C76A6NM76 312 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 A8MUA0 341 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 GOLGA8RI6L899 631 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ACOT7O00154 380 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 CYR61O00622 381 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 OR7A17O14581 309 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 PFDN1O60925 122 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 GPR75O95800 540 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 TROVE2P10155 538 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP3-208ENST00000558285 ALOX15P16050 662 aaPredicted RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 KRT4P19013 534 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 TRHRP34981 398 aaPredicted RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 SLCO1A2P46721 670 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 TMED10P49755 219 aaKnown RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 HLCSP50747 726 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 DNAJB13P59910 316 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 PSPHP78330 225 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ACSM2AQ08AH3 577 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 TRAF3Q13114 568 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 SGO1Q5FBB7 561 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ZNF678Q5SXM1 525 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ACSM2BQ68CK6 577 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 PAOXQ6QHF9 649 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 CLNKQ7Z7G1 428 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 CRLF3Q8IUI8 442 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 TAGAPQ8N103 731 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 WDR20Q8TBZ3 569 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ASB15Q8WXK1 588 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 METTL2AQ96IZ6 378 aaKnown RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 SGCZQ96LD1 299 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 OR8D2Q9GZM6 311 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ZNF358Q9NW07 568 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 TMEM216Q9P0N5 145 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 SUCOQ9UBS9 1254 aaKnown RBP8.09□□□□□ -1.11
USP3-208ENST00000558285 SH3GLB1Q9Y371 365 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 ZNF780BQ9Y6R6 833 aa8.09□□□□□ -1.11
USP3-208ENST00000558285 CFAP47Q6ZTR5 3102 aa8.08□□□□□ -1.12
USP3-208ENST00000558285 NUP210LQ5VU65 1888 aa8.08□□□□□ -1.12
USP3-208ENST00000558285 FER1L5A0AVI2 2057 aa8.08□□□□□ -1.12
USP3-208ENST00000558285 GNG14A0A1W2PPG7 69 aa8.08□□□□□ -1.12
USP3-208ENST00000558285 A8MVJ9 347 aa8.08□□□□□ -1.12
USP3-208ENST00000558285 FAM227AF5H4B4 570 aa8.08□□□□□ -1.12
USP3-208ENST00000558285 SAP18O00422 153 aaKnown RBP8.08□□□□□ -1.12
USP3-208ENST00000558285 PLPP1O14494 284 aa8.08□□□□□ -1.12
USP3-208ENST00000558285 SLC25A12O75746 678 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms