RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RNF32Q9H0A6 362 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 MANSC1Q9H8J5 431 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 MYNNQ9NPC7 610 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 THAP1Q9NVV9 213 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 ABI3Q9P2A4 366 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 HAO1Q9UJM8 370 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 ZNF223Q9UK11 482 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-228ENST00000557302 UTS2RQ9UKP6 389 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 B3GNT3Q9Y2A9 372 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 ZNF780BQ9Y6R6 833 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 TENM4Q6N022 2769 aa12.66□□□□□ -0.38
SHMT2-228ENST00000557302 ATP6AP2A0A1C7CYW4 349 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 A0A1W2PS29 197 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 PEX11AO75192 247 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 ATP6AP2O75787 350 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 ZFAND5O76080 213 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 WDPCPO95876 746 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 PORP16435 677 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 CSNK2A2P19784 350 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 DDCP20711 480 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 MAPK1P28482 360 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 FEN1P39748 380 aaKnown RBP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 C2orf80Q0P641 193 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 ZNF267Q14586 743 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 PDCD2Q16342 344 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 SPRED3Q2MJR0 410 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 ZNF750Q32MQ0 723 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 RFTN2Q52LD8 501 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 COLEC12Q5KU26 742 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 C6orf163Q5TEZ5 329 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 SLC6A19Q695T7 634 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 FAM71E1Q6IPT2 247 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 HSDL2Q6YN16 418 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 PRICKLE2Q7Z3G6 844 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 GALNT12Q8IXK2 581 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 SAMD14Q8IZD0 417 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 BEST3Q8N1M1 668 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 ZNF721Q8TF20 911 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 THAP3Q8WTV1 239 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 TUBGCP3Q96CW5 907 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 SENP5Q96HI0 755 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 FBXL20Q96IG2 436 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 C3orf30Q96M34 536 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 NPAS2Q99743 824 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 CNPPD1Q9BV87 410 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 CDCP1Q9H5V8 836 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 CXorf21Q9HAI6 301 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 MIEF1Q9NQG6 463 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 GIMAP4Q9NUV9 329 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.65□□□□□ -0.38
SHMT2-228ENST00000557302 ZNF446Q9NWS9 450 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 PLA2G3Q9NZ20 509 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 EHD3Q9NZN3 535 aa12.65□□□□□ -0.38
SHMT2-228ENST00000557302 ASH1LQ9NR48 2969 aaKnown RBP12.64□□□□□ -0.39
SHMT2-228ENST00000557302 GABRR3A8MPY1 467 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 SUV39H1O43463 412 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 MAN1A2O60476 641 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 SNNO75324 88 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-228ENST00000557302 F10P00742 488 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 NT5EP21589 574 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 TACR1P25103 407 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 CASRP41180 1078 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 MLF1P58340 268 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 ERVK-8P63133 956 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 PPP2R2AP63151 447 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 TLR1Q15399 786 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 Q6ZS92 163 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 LRRC25Q8N386 305 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF321PQ8N8H1 164 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 DOK4Q8TEW6 326 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 HAS2Q92819 552 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 EXOSC8Q96B26 276 aaKnown RBP12.64□□□□□ -0.39
SHMT2-228ENST00000557302 CNRIP1Q96F85 164 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-228ENST00000557302 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.64□□□□□ -0.39
SHMT2-228ENST00000557302 SLAMF7Q9NQ25 335 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 PNPOQ9NVS9 261 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 LUZP4Q9P127 313 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 GIMAP2Q9UG22 337 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 ERVK-19Q9WJR5 959 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 ENTPD4Q9Y227 616 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 CSAG2Q9Y5P2 127 aa12.64□□□□□ -0.39
SHMT2-228ENST00000557302 OR5H15A6NDH6 313 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 HRKO00198 91 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 FCHO1O14526 889 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 KLF11O14901 512 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 SLC28A2O43868 658 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 PRKNO60260 465 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-228ENST00000557302 IGKV3-11P04433 115 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 ATP1B1P05026 303 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 JUNP05412 331 aaKnown RBP12.63□□□□□ -0.39
SHMT2-228ENST00000557302 SDC1P18827 310 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 ASMTP46597 345 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 TNFSF10P50591 281 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 HK2P52789 917 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF169Q14929 603 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-228ENST00000557302 PLEKHN1Q494U1 663 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-228ENST00000557302 C6orf136Q5SQH8 315 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 FAM180BQ6P0A1 224 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 RNF111Q6ZNA4 994 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms