RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 HKDC1Q2TB90 917 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 ERICH5Q6P6B1 374 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 Q6ZPB1 254 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 EIF3MQ7L2H7 374 aaKnown RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 NLRP8Q86W28 1048 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 KLHDC8AQ8IYD2 350 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 GPR156Q8NFN8 814 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 ZNF480Q8WV37 535 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 DNAJA4Q8WW22 397 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 TIFAQ96CG3 184 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 BARHL1Q9BZE3 327 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 C11orf49Q9H6J7 331 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 IL23AQ9NPF7 189 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 RUVBL1Q9Y265 456 aaKnown RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 TCF20Q9UGU0 1960 aaKnown RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 A0A0B4J293 547 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 TMEM229AB2RXF0 380 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 PRRT4C9JH25 899 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 KPNA3O00505 521 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 SCAMP2O15127 329 aaKnown RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 PAHP00439 452 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 CHMP24386 653 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 CTNNB1P35222 781 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 ALDH9A1P49189 494 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 RPS13P62277 151 aaKnown RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 ZNF33BQ06732 778 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 ACSM2AQ08AH3 577 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 GAB1Q13480 694 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 GLYR1Q49A26 553 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 ZNF385BQ569K4 471 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 ACSM2BQ68CK6 577 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 PLET1Q6UQ28 207 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 SLCO4C1Q6ZQN7 724 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 LAX1Q8IWV1 398 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 CHTF18Q8WVB6 975 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 MAL2Q969L2 176 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 RNF31Q96EP0 1072 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 HSH2DQ96JZ2 352 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 COQ10AQ96MF6 247 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 OR5M11Q96RB7 305 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 DUSP26Q9BV47 211 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 CHST8Q9H2A9 424 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 POLMQ9NP87 494 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 EXOSC4Q9NPD3 245 aaKnown RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 ZC4H2Q9NQZ6 224 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 RAD18Q9NS91 495 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 HSPB11Q9Y547 144 aa11.65□□□□□ -0.54
SHMT2-207ENST00000553837 PCYT1BQ9Y5K3 369 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-207ENST00000553837 IQCMA0A1B0GVH7 501 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 C1orf226A1L170 272 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 LINC00862A6NCI5 91 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 OTOL1A6NHN0 477 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 PRMT3O60678 531 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 GCM2O75603 506 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 KLHL18O94889 574 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 C1orf105O95561 183 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 CATP04040 527 aaKnown RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 GBAP04062 536 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 CSF2P04141 144 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 ANXA4P09525 319 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 IDSP22304 550 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 ALAS2P22557 587 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 NNMTP40261 264 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 KIR2DL3P43628 341 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 SLC6A11P48066 632 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 IDH2P48735 452 aaKnown RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 DGKGP49619 791 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 CASP9P55211 416 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 C21orf58P58505 322 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 SNRPD2P62316 118 aaKnown RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 PCDH1Q08174 1060 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 IQCCQ4KMZ1 466 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 PAMR1Q6UXH9 720 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 CBLL1Q75N03 491 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 TRIM69Q86WT6 500 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 LINC00518Q8N0U6 118 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 SYNPOQ8N3V7 929 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 B3GNT7Q8NFL0 401 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 ARRDC3Q96B67 414 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 DTD2Q96FN9 168 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF578Q96N58 590 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 NRTNQ99748 197 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 TAPBPLQ9BX59 468 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 SPNS1Q9H2V7 528 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 TPT1P8Q9HAU6 139 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 FAM120CQ9NX05 1096 aaKnown RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 MS4A12Q9NXJ0 267 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF226Q9NYT6 803 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 INSL6Q9Y581 213 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 KIAA0100Q14667 2235 aaKnown RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 FABP12A6NFH5 140 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 PLD2O14939 933 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 YKT6O15498 198 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 CSF3P09919 207 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 VIPR2P41587 438 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 RAB25P57735 213 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 TBPL1P62380 186 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 BAMBIQ13145 260 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 ANGPT1Q15389 498 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms