RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 WNT4P56705 351 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 FAPQ12884 760 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 TMEM115Q12893 351 aaPredicted RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 TCTN1Q2MV58 587 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 KLHL22Q53GT1 634 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 SYT14P1Q58G82 188 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 ZNF628Q5EBL2 1059 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 SLC25A30Q5SVS4 291 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 RBM45Q8IUH3 476 aaKnown RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 C19orf18Q8NEA5 215 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 ATP6V1C2Q8NEY4 427 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 SLC7A13Q8TCU3 470 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 LRR1Q96L50 414 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 ZNF354BQ96LW1 612 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 KATNB1Q9BVA0 655 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 TESQ9UGI8 421 aaKnown RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 SLC30A4O14863 429 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 HCN1O60741 890 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 CTSAP10619 480 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 DDX5P17844 614 aaKnown RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 GABRR2P28476 465 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 RECQLP46063 649 aaPredicted RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 GPR19Q15760 415 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 TMEM220Q6QAJ8 160 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 LIX1LQ8IVB5 337 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 FBXO15Q8NCQ5 510 aaPredicted RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 ZFAND1Q8TCF1 268 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 SLC5A11Q8WWX8 675 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 MRPS31Q92665 395 aaKnown RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 GLYATL1Q969I3 302 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 NDRG2Q9UN36 371 aaKnown RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 GSTK1Q9Y2Q3 226 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 BRCA2P51587 3418 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 THSD7BQ9C0I4 1608 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 A0A1W2PQ45 241 aaPredicted RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 A0A1W2PQY0 241 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 CACNB4O00305 520 aaPredicted RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 CPNE3O75131 537 aaKnown RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 TRIM3O75382 744 aaPredicted RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 SOD2P04179 222 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 TP53P04637 393 aaPredicted RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 MAP2K3P46734 347 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 KCNJ5P48544 419 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 COX10Q12887 443 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 TATDN3Q17R31 274 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 CRTC2Q53ET0 693 aaPredicted RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 TRIQKQ629K1 86 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 TIGD3Q6B0B8 471 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 NXPE4Q6UWF7 544 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 ZNF730Q6ZMV8 503 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 CADM2Q8N3J6 435 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 YIPF7Q8N8F6 280 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 SLC43A3Q8NBI5 491 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 RAB8BQ92930 207 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 SGPP1Q9BX95 441 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 RSPO3Q9BXY4 272 aaPredicted RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 IRF2BPLQ9H1B7 796 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 SPNS1Q9H2V7 528 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 ACAD8Q9UKU7 415 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 YARS2Q9Y2Z4 477 aaKnown RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 TET1Q8NFU7 2136 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 SMIM30A4D0T7 59 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 ARHGEF9O43307 516 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 CCNYL3P0C7X3 344 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 SLC2A2P11168 524 aaPredicted RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 MANFP55145 182 aaKnown RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 RPS25P62851 125 aaKnown RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 PPP3R1P63098 170 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 CNTN1Q12860 1018 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 MADCAM1Q13477 382 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 RAB33AQ14088 237 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 EFR3AQ14156 821 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 GINS1Q14691 196 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 FLYWCH1Q4VC44 716 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 C3orf38Q5JPI3 329 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 MZT2BQ6NZ67 158 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 SYCE2Q6PIF2 218 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 PDZD3Q86UT5 571 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 OR5P2Q8WZ92 322 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 UBE2E3Q969T4 207 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 ZNF582Q96NG8 517 aaPredicted RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 ZNF607Q96SK3 696 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 SEC14L3Q9UDX4 400 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 CARD8Q9Y2G2 431 aa16.64■□□□□ 0.25
SYNE3-202ENST00000553340 TMA7Q9Y2S6 64 aaKnown RBP16.64■□□□□ 0.25
SYNE3-202ENST00000553340 PROM1O43490 865 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 ALAS2P22557 587 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 CCL23P55773 120 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 NDUFA9Q16795 377 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 PAMR1Q6UXH9 720 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 TCEAL8Q8IYN2 117 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 LMNTD1Q8N9Z9 388 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 OR4D11Q8NGI4 311 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 OR2A12Q8NGT7 310 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 OR52P1PQ8NH57 321 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 FUZQ9BT04 418 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 SORBS1Q9BX66 1292 aaKnown RBP16.63■□□□□ 0.25
SYNE3-202ENST00000553340 MVB12BQ9H7P6 319 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 ZSCAN32Q9NX65 697 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms