RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 BSGP35613 385 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 LIPAP38571 399 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SERPINB10P48595 397 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 RAB28P51157 221 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 MVDP53602 400 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 LIM2P55344 173 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CHRNEQ04844 493 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PRDX1Q06830 199 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PUM1Q14671 1186 aaKnown RBP eCLIP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 EIF4HQ15056 248 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SEC23BQ15437 767 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 RPE65Q16518 533 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 RFX4Q33E94 735 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 DCST1Q5T197 706 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 FCRLBQ6BAA4 426 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TYW3Q6IPR3 259 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 REEP3Q6NUK4 255 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TMEM92Q6UXU6 159 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PRR23CQ6ZRP0 262 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 C16orf62Q7Z3J2 963 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 KIAA0907Q7Z7F0 614 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 P2RY8Q86VZ1 359 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 OR4N4Q8N0Y3 316 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 IL17RCQ8NAC3 791 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 FAM46DQ8NEK8 389 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TBC1D15Q8TC07 691 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 FAR1Q8WVX9 515 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 NCSTNQ92542 709 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 COQ8BQ96D53 544 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 OR5M11Q96RB7 305 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 FNDC11Q9BVV2 318 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TBC1D23Q9NUY8 699 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 KLHL42Q9P2K6 505 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 APOBEC3BQ9UH17 382 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CLEC2DQ9UHP7 191 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 DAPK2Q9UIK4 370 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 BTNL2Q9UIR0 455 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PSME2Q9UL46 239 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CEP250Q9BV73 2442 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 IGKV1-8A0A0C4DH67 115 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TTC36A6NLP5 189 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 H3BSH0 61 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 K7EQS6 105 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 RNASET2O00584 256 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ADAM23O75077 832 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PTHP01270 115 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 RPN2P04844 631 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF888P0CJ79 500 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CTSEP14091 401 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 DDCP20711 480 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 NT5EP21589 574 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CPN2P22792 545 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CXCR2P25025 360 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GTF2E2P29084 291 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 NTSP30990 170 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 EXOSC7Q15024 291 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PTGES3Q15185 160 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TIGD6Q17RP2 521 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CDKL4Q5MAI5 379 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 MFSD4BQ5TF39 518 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 KDM4DQ6B0I6 523 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 UBE3DQ7Z6J8 389 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 COMTD1Q86VU5 262 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ABHD11Q8NFV4 315 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 OR13F1Q8NGS4 319 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SP7Q8TDD2 431 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SMAP2Q8WU79 429 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ZFPM2Q8WW38 1151 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 DACH2Q96NX9 599 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TREX2Q9BQ50 279 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CNPPD1Q9BV87 410 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GPR174Q9BXC1 333 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 RSPO3Q9BXY4 272 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 BHLHE41Q9C0J9 482 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 POLR2J3Q9H1A7 115 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 BRF2Q9HAW0 419 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SLC35C2Q9NQQ7 365 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 MAT2BQ9NZL9 334 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ICKQ9UPZ9 632 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 NCKAP1Q9Y2A7 1128 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 MRPS2Q9Y399 296 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PCDHGA6Q9Y5G7 932 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 RIF1Q5UIP0 2472 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 COL6A3P12111 3177 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 MTCL1Q9Y4B5 1905 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 A0A1W2PPV9 198 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PRAMEF27A3QJZ7 478 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 AIREO43918 545 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 UGDHO60701 494 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TNFRSF21O75509 655 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 WBP4O75554 376 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 AIFM1O95831 613 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 C5AR1P21730 350 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 UQCRC2P22695 453 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PIK3CBP42338 1070 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GPR4P46093 362 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 XKP51811 444 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ADPRHP54922 357 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 FOXL2P58012 376 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 VSX2P58304 361 aaPredicted RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms