RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CRYBB2P43320 205 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 PCYT1AP49585 367 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 XKP51811 444 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SPHARQ15513 63 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TAB1Q15750 504 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF79Q15937 498 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 PGBD2Q6P3X8 592 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 FAM20CQ8IXL6 584 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 FBXO15Q8NCQ5 510 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 C9orf43Q8TAL5 461 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 NEURL3Q96EH8 262 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 ZFYVE19Q96K21 471 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 PRAP1Q96NZ9 151 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TRNT1Q96Q11 434 aaKnown RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 OR2A14Q96R47 310 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 GPA33Q99795 319 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 CTRCQ99895 268 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 MACROD1Q9BQ69 325 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 YIPF4Q9BSR8 244 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 POLR2J2Q9GZM3 115 aaKnown RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 RNF208Q9H0X6 261 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 FZD3Q9NPG1 666 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SEMA3GQ9NS98 782 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TMEM39AQ9NV64 488 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SAGE1Q9NXZ1 904 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TVP23BQ9NYZ1 205 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SPATA7Q9P0W8 599 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TBX21Q9UL17 535 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TMCC3Q9ULS5 477 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 V9GYH0 126 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 DENND4AQ7Z401 1863 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 GLOD5A6NK44 160 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 PLD2O14939 933 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 PDPK1O15530 556 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 TLX2O43763 284 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 LZTS3O60299 673 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 CCNKO75909 580 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 ADAP00813 363 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 CYP17A1P05093 508 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 H1F0P07305 194 aaKnown RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 SRPRAP08240 638 aaKnown RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 OR12D1P0DN82 309 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 DDCP20711 480 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 CSTF2P33240 577 aaKnown RBP eCLIP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 BSGP35613 385 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 RPL3P39023 403 aaKnown RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 ETV6P41212 452 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 SLC6A11P48066 632 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 COPZ1P61923 177 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 SPDYE7PQ495Y7 208 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 C6orf183Q5T699 404 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 RSBN1Q5VWQ0 802 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 KHDRBS2Q5VWX1 349 aaKnown RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 SLX4IPQ5VYV7 408 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 ACSM5Q6NUN0 579 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 GATAD2AQ86YP4 633 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 KLHL6Q8WZ60 621 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 MTERF3Q96E29 417 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 TREX2Q9BQ50 279 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 TSSK6Q9BXA6 273 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 MS4A8Q9BY19 250 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 QRSL1Q9H0R6 528 aaKnown RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 POLR2J3Q9H1A7 115 aaKnown RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 OR52A5Q9H2C5 316 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 TP63Q9H3D4 680 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 TIGARQ9NQ88 270 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 DKK3Q9UBP4 350 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 MKLN1Q9UL63 735 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 ICKQ9UPZ9 632 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 TRIOO75962 3097 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 A0A1W2PS29 197 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 PDZK1P1A8MUH7 402 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 PI15O43692 258 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 SLC28A2O43868 658 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 LCMT2O60294 686 aaKnown RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 EPPINO95925 133 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 SERPIND1P05546 499 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 CISD3P0C7P0 127 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 ETV5P41161 510 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 RFX2P48378 723 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 KCNJ5P48544 419 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 ETV1P50549 477 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 OR2B6P58173 313 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 ILKQ13418 452 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 DHCR24Q15392 516 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 OR2G6Q5TZ20 316 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 C12orf73Q69YU5 71 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 PODNL1Q6PEZ8 512 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 CASP12Q6UXS9 341 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 TMC5Q6UXY8 1006 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 UNC5DQ6UXZ4 953 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 SHFQ7M4L6 423 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 SPRED2Q7Z698 418 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 GRASPQ7Z6J2 395 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-213ENST00000552720 UBE2J2Q8N2K1 259 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 XAGE5Q8WWM1 108 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 TMEM80Q96HE8 168 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 HHIPL1Q96JK4 782 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 LGR4Q9BXB1 951 aa7.1□□□□□ -1.27
LIMA1-213ENST00000552720 NEK6Q9HC98 313 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms