RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 WWOXQ9NZC7 414 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 IKZF3Q9UKT9 509 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 CNOT11Q9UKZ1 510 aaKnown RBP15.5■□□□□ 0.07
VPS29-204ENST00000548259 SMAD7O15105 426 aaKnown RBP15.49■□□□□ 0.07
VPS29-204ENST00000548259 ACSL3O95573 720 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 ALOX15P16050 662 aaPredicted RBP15.49■□□□□ 0.07
VPS29-204ENST00000548259 PGGT1BP53609 377 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 ILF2Q12905 390 aaKnown RBP15.49■□□□□ 0.07
VPS29-204ENST00000548259 RPS6KA2Q15349 733 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 PPP1R7Q15435 360 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 TSNQ15631 228 aaKnown RBP15.49■□□□□ 0.07
VPS29-204ENST00000548259 HLA-DQA1Q5Y7H0 255 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 LYPD8Q6UX82 237 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 VN1R5Q7Z5H4 357 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 ST13P4Q8IZP2 240 aaPredicted RBP15.49■□□□□ 0.07
VPS29-204ENST00000548259 BBOF1Q8ND07 529 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 ABTB1Q969K4 478 aaPredicted RBP15.49■□□□□ 0.07
VPS29-204ENST00000548259 TM9SF2Q99805 663 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 WWTR1Q9GZV5 400 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 PIGMQ9H3S5 423 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 PROK2Q9HC23 129 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 LZTFL1Q9NQ48 299 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 SNX15Q9NRS6 342 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 PHF11Q9UIL8 331 aa15.49■□□□□ 0.07
VPS29-204ENST00000548259 NCF1BA6NI72 391 aaPredicted RBP15.48■□□□□ 0.07
VPS29-204ENST00000548259 NCF1CA8MVU1 366 aaPredicted RBP15.48■□□□□ 0.07
VPS29-204ENST00000548259 FGF17O60258 216 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 ACTL6AO96019 429 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 NCF1P14598 390 aaPredicted RBP15.48■□□□□ 0.07
VPS29-204ENST00000548259 SERPINB1P30740 379 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 SLC12A2P55011 1212 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 NRG3P56975 720 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 HERVK_113P63132 956 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 ERVK-8P63133 956 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 IGLV3-21P80748 117 aaPredicted RBP15.48■□□□□ 0.07
VPS29-204ENST00000548259 IRF8Q02556 426 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 ZNF267Q14586 743 aaPredicted RBP15.48■□□□□ 0.07
VPS29-204ENST00000548259 PDK4Q16654 411 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 YTHDF3Q7Z739 585 aaKnown RBP15.48■□□□□ 0.07
VPS29-204ENST00000548259 LUZP2Q86TE4 346 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 OR4N5Q8IXE1 308 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 VWA5B2Q8N398 1253 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 ZPLD1Q8TCW7 415 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 UCN3Q969E3 161 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 PPWD1Q96BP3 646 aaKnown RBP15.48■□□□□ 0.07
VPS29-204ENST00000548259 RILPQ96NA2 401 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 WDR83Q9BRX9 315 aaKnown RBP15.48■□□□□ 0.07
VPS29-204ENST00000548259 ERVK-6Q9BXR3 956 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 GALNT8Q9NY28 637 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 ZNF490Q9ULM2 529 aaPredicted RBP15.48■□□□□ 0.07
VPS29-204ENST00000548259 ERVK-19Q9WJR5 959 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 C15orf41Q9Y2V0 281 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 SLC6A5Q9Y345 797 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 COL6A5A8TX70 2615 aa15.48■□□□□ 0.07
VPS29-204ENST00000548259 GOLGA6L10A0A0M3HER8 536 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 KDM4EB2RXH2 506 aaPredicted RBP15.47■□□□□ 0.07
VPS29-204ENST00000548259 STK16O75716 305 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 SCELO95171 688 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 LRATO95237 230 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 TBX6O95947 436 aaPredicted RBP15.47■□□□□ 0.07
VPS29-204ENST00000548259 KRT15P19012 456 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 BUD31P41223 144 aaPredicted RBP15.47■□□□□ 0.07
VPS29-204ENST00000548259 SLAMF1Q13291 335 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 GAB1Q13480 694 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 DOC2AQ14183 400 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 EBPQ15125 230 aaKnown RBP15.47■□□□□ 0.07
VPS29-204ENST00000548259 TGFBIQ15582 683 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 SPRED3Q2MJR0 410 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 CDKL4Q5MAI5 379 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 RNASEH2BQ5TBB1 312 aaKnown RBP15.47■□□□□ 0.07
VPS29-204ENST00000548259 SULT1C3Q6IMI6 304 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 ZNF793Q6ZN11 406 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 PDIK1LQ8N165 341 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 RIT1Q92963 219 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 TP53INP1Q96A56 240 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 WDR34Q96EX3 536 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 WDYHV1Q96HA8 205 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 GNRHR2Q96P88 292 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 CCL19Q99731 98 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 UGT2B28Q9BY64 529 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 ZNF226Q9NYT6 803 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 SLC17A6Q9P2U8 582 aa15.47■□□□□ 0.07
VPS29-204ENST00000548259 C2orf92A0A1B0GVN3 265 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 INAFM1C9JVW0 142 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 S100BP04271 92 aaPredicted RBP15.46■□□□□ 0.07
VPS29-204ENST00000548259 GGT5P36269 586 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 RAP1GDS1P52306 607 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 PCDH1Q08174 1060 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 SETDB1Q15047 1291 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 CYP1B1Q16678 543 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 C18orf21Q32NC0 220 aaPredicted RBP15.46■□□□□ 0.07
VPS29-204ENST00000548259 ENPP6Q6UWR7 440 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 ZNF662Q6ZS27 426 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 UBE3DQ7Z6J8 389 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 GPR180Q86V85 440 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 GPSM1Q86YR5 675 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 SPC24Q8NBT2 197 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 NANOS1Q8WY41 292 aaKnown RBP15.46■□□□□ 0.07
VPS29-204ENST00000548259 DTNBP1Q96EV8 351 aa15.46■□□□□ 0.07
VPS29-204ENST00000548259 CMTM7Q96FZ5 175 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms