RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 PEX13Q92968 403 aa13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 SNF8Q96H20 258 aa13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 RILPQ96NA2 401 aa13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 UCN2Q96RP3 112 aa13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 RHNO1Q9BSD3 238 aa13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 KLHL4Q9C0H6 718 aa13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 ACBD3Q9H3P7 528 aa13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 ETNK1Q9HBU6 452 aa13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 PDE10AQ9Y233 779 aa13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 YLPM1P49750 1951 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-216ENST00000545663 PRR14LQ5THK1 2151 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 VWFP04275 2813 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 SSX4O60224 188 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 LMX1BO60663 402 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 CTNSO60931 367 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 LDB3O75112 727 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 VAPBO95292 243 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 DANCRP0C864 163 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 STIP1P31948 543 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 MSH2P43246 934 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 SIRPAP78324 504 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 STX4Q12846 297 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 FAPQ12884 760 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 CCNG2Q16589 344 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 CYB5R2Q6BCY4 276 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 DRICH1Q6PGQ1 229 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 SBSNQ6UWP8 590 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 SDCCAG8Q86SQ7 713 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 ZNF610Q8N9Z0 462 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 FAM83FQ8NEG4 500 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 NUBPLQ8TB37 319 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 NEUROG1Q92886 237 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 SENP5Q96HI0 755 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 SLC39A3Q9BRY0 314 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 CHODLQ9H9P2 273 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 ELOVL5Q9NYP7 299 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 HEY2Q9UBP5 337 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 IKBKGQ9Y6K9 419 aa13.93□□□□□ -0.18
CLSTN3-216ENST00000545663 ANKRD33BA6NCL7 494 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 URADA6NGE7 173 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 GNB5O14775 395 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 ACTL6AO96019 429 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 IGHV4-31P0DP07 118 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 SERPINB3P29508 390 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 CXCR5P32302 372 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 AHRP35869 848 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 KIR2DL2P43627 348 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 RPL21P46778 160 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 FBXW4P57775 412 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 SESN2P58004 480 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 EEF1A1P68104 462 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 BBS9Q3SYG4 887 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 PCID2Q5JVF3 399 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 EEF1A1P5Q5VTE0 462 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 SYT10Q6XYQ8 523 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 DGAT2L6Q6ZPD8 337 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 GRAMD2AQ8IUY3 354 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 CPNE9Q8IYJ1 553 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 SLC15A4Q8N697 577 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 UCN3Q969E3 161 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 NEIL2Q969S2 332 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 C16orf45Q96MC5 204 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 KRT12Q99456 494 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 C12orf65Q9H3J6 166 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 COPS7AQ9UBW8 275 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 MALRD1Q5VYJ5 2156 aa13.92□□□□□ -0.18
CLSTN3-216ENST00000545663 CGAP01215 116 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 ITGA2P17301 1181 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 HNRNPH1P31943 449 aaKnown RBP13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 MASP1P48740 699 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 RBBP5Q15291 538 aaKnown RBP13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 NTRK2Q16620 822 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 TTLL9Q3SXZ7 439 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 MRNIPQ6NTE8 343 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 ZNF549Q6P9A3 640 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 C4orf22Q6V702 233 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 CENPUQ71F23 418 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 PRUNE1Q86TP1 453 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 WFDC8Q8IUA0 241 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 KIF18AQ8NI77 898 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 SMAP2Q8WU79 429 aaPredicted RBP13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 FAR2Q96K12 515 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 HS6ST2Q96MM7 605 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 TSNARE1Q96NA8 513 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 GAL3ST4Q96RP7 486 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 HAUS8Q9BT25 410 aa13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 TEX10Q9NXF1 929 aaPredicted RBP13.91□□□□□ -0.18
CLSTN3-216ENST00000545663 PLOD2O00469 737 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 OR10H2O60403 315 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 IGKV3-11P04433 115 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 SERPINA6P08185 405 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 TBXA2RP21731 343 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 PTPN6P29350 595 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 LIM2P55344 173 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 LOXL1Q08397 574 aaPredicted RBP13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 CSHL1Q14406 222 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 EXOC3L2Q2M3D2 409 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 PACS2Q86VP3 889 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 TRIM42Q8IWZ5 723 aa13.9□□□□□ -0.18
CLSTN3-216ENST00000545663 DEPDC4Q8N2C3 294 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms