RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 HRH3Q9Y5N1 445 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PRRC2BQ5JSZ5 2229 aaKnown RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 PGPEP1LA6NFU8 196 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 BTN3A1O00481 513 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 SOX30O94993 753 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 IFNA4P05014 189 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ANXA3P12429 323 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 CD46P15529 392 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 LHCGRP22888 699 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 SDC2P34741 201 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 NUP62P37198 522 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 TAGLN2P37802 199 aaKnown RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 ABATP80404 500 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 GUCA2AQ02747 115 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 VEZF1Q14119 521 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ZNF267Q14586 743 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 ZNF169Q14929 603 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 VEPH1Q14D04 833 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 SYT16Q17RD7 645 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.01□□□□□ -1.61
USP28-213ENST00000544967 BSPRYQ5W0U4 402 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 B3GNTL1Q67FW5 361 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 PRICKLE2Q7Z3G6 844 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 LRRC17Q8N6Y2 441 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 PTGR2Q8N8N7 351 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 TMEM163Q8TC26 289 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ZNF431Q8TF32 576 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 FOXJ1Q92949 421 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 FAM131CQ96AQ9 280 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 MOCOSQ96EN8 888 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 C11orf24Q96F05 449 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 SCMH1Q96GD3 660 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 PIWIL1Q96J94 861 aaKnown RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 Q96MT0 163 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 HHIPQ96QV1 700 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 MGLLQ99685 303 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 C7orf50Q9BRJ6 194 aaKnown RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 REG4Q9BYZ8 158 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 RNF32Q9H0A6 362 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 SAP130Q9H0E3 1048 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 SIK2Q9H0K1 926 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 PPP1R3EQ9H7J1 279 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ANKRA2Q9H9E1 313 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ZFP64Q9NPA5 681 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 PADI2Q9Y2J8 665 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 CDH10Q9Y6N8 788 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 CLDN5O00501 218 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 FABP3P05413 133 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 IL9P15248 144 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 RPS3P23396 243 aaKnown RBP eCLIP5.01□□□□□ -1.61
USP28-213ENST00000544967 PSMA1P25786 263 aaKnown RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 RORAP35398 523 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 SLC19A1P41440 591 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 PGFP49763 221 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 DIO3P55073 304 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 YBX1P67809 324 aaKnown RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 TP53BP2Q13625 1128 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 NCF4Q15080 339 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 FAM78AQ5JUQ0 283 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ZCCHC12Q6PEW1 402 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 VITQ6UXI7 678 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ZNF704Q6ZNC4 412 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 TRILQ7L0X0 811 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 EIF3MQ7L2H7 374 aaKnown RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 FGD2Q7Z6J4 655 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 CILP2Q8IUL8 1156 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 DENND6AQ8IWF6 608 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ETFBKMTQ8IXQ9 262 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 RNF113BQ8IZP6 322 aaKnown RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 CELF5Q8N6W0 485 aaKnown RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 CCNYQ8ND76 341 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 NLGN4YQ8NFZ3 816 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 OR9Q1Q8NGQ5 310 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 OR6P1Q8NGX9 317 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ELMO1Q92556 727 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 CLDN23Q96B33 292 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 FCRL2Q96LA5 508 aaPredicted RBP5.01□□□□□ -1.61
USP28-213ENST00000544967 KCNK17Q96T54 332 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 MAPKAP1Q9BPZ7 522 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 TMEM43Q9BTV4 400 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 SLC46A2Q9BY10 475 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 TMPRSS13Q9BYE2 586 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 DNTTIP1Q9H147 329 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 MMP28Q9H239 520 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 RHBGQ9H310 441 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ABCC13Q9NSE7 274 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 HCFC1R1Q9NWW0 138 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ZNF224Q9NZL3 707 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 WNT16Q9UBV4 365 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 IKZF3Q9UKT9 509 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 ACTL7AQ9Y615 435 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 KCNMB2Q9Y691 235 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 MYLKQ15746 1914 aa5.01□□□□□ -1.61
USP28-213ENST00000544967 GLYATL1P3A0A0U1RQE8 302 aa5□□□□□ -1.61
USP28-213ENST00000544967 A0A1B0GW55 424 aa5□□□□□ -1.61
USP28-213ENST00000544967 UBA6A0AVT1 1052 aaPredicted RBP5□□□□□ -1.61
USP28-213ENST00000544967 FABP12A6NFH5 140 aa5□□□□□ -1.61
USP28-213ENST00000544967 A8MV72 311 aaPredicted RBP5□□□□□ -1.61
USP28-213ENST00000544967 RGS5O15539 181 aa5□□□□□ -1.61
USP28-213ENST00000544967 LYRM1O43325 122 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms