RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 GALNTL6Q49A17 601 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 ATP6AP1LQ52LC2 224 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 TOR1AIP1Q5JTV8 583 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 TCTE1Q5JU00 501 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 GKAP1Q5VSY0 366 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 YOD1Q5VVQ6 348 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 FAM219BQ5XKK7 198 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 FBXO42Q6P3S6 717 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 C3P1Q6ZMU1 363 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 RIPOR1Q6ZS17 1223 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 Q71RC1 249 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 FGD2Q7Z6J4 655 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 BIVMQ86UB2 503 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 TMEM200AQ86VY9 491 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 METTL27Q8N6F8 245 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 CSNK1A1LQ8N752 337 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 ANKRD53Q8N9V6 530 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 TTC29Q8NA56 475 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 RFWD2Q8NHY2 731 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF473Q8WTR7 871 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 PPP3R2Q96LZ3 170 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 CCT8L2Q96SF2 557 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF559Q9BR84 538 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 SARGQ9BW04 601 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 TMEM120AQ9BXJ8 343 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 TSPAN10Q9H1Z9 355 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 COPS7BQ9H9Q2 264 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 MEAF6Q9HAF1 191 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 VPS29Q9UBQ0 182 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 KCNN3Q9UGI6 736 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 C3orf18Q9UK00 162 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 TSC22D4Q9Y3Q8 395 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 PTGDR2Q9Y5Y4 395 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 PHF3Q92576 2039 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 IGLV3-12A0A075B6K2 115 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 IGHV1-45A0A0A0MS14 117 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 FITM1A5D6W6 292 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 ASPDHA6ND91 283 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 ASNA1O43681 348 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 SEC22BO75396 215 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 RSL1D1O76021 490 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 SERPINA6P08185 405 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 HOXD4P09016 255 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 EPHA3P29320 983 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 ACSM2AQ08AH3 577 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 MAD2L1Q13257 205 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 PWP1Q13610 501 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 CEBPEQ15744 281 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 NDUFA9Q16795 377 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 UGT3A2Q3SY77 523 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF766Q5HY98 468 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 WASHC2DQ5SRD0 308 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 ACSM2BQ68CK6 577 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 ADNP2Q6IQ32 1131 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 TRIM40Q6P9F5 258 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 EPGNQ6UW88 154 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 RNF175Q8N4F7 328 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 MARVELD2Q8N4S9 558 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 SRFBP1Q8NEF9 429 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 LILRB4Q8NHJ6 448 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 SUN3Q8TAQ9 357 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 ZCCHC10Q8TBK6 192 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 BCAS4Q8TDM0 211 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 OR2A5Q96R48 311 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 MS4A8Q9BY19 250 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 ACPTQ9BZG2 426 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 REXO4Q9GZR2 422 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 OR51B5Q9H339 312 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 TUBB1Q9H4B7 451 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 WDR55Q9H6Y2 383 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 TCF7L2Q9NQB0 619 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 STMN3Q9NZ72 180 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 ST6GALNAC2Q9UJ37 374 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 TRIM33Q9UPN9 1127 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 HRH3Q9Y5N1 445 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 MAU2Q9Y6X3 613 aa11.67□□□□□ -0.54
CLSTN3-208ENST00000538933 A0A088AWK7 358 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 LOC105369274A0A096LPK9 316 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 LOC102723532A0A0G2JNH3 316 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 SERTM1A2A2V5 107 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 NPIPA5E9PKD4 350 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 FAM227AF5H4B4 570 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 SAP18O00422 153 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 SDHDO14521 159 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 ERI3O43414 337 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 PEX11AO75192 247 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 JUNP05412 331 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 ALOX15P16050 662 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 LBPP18428 481 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF10P21506 573 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 MSX1P28360 303 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 MAPK1P28482 360 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 RPL38P63173 70 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 GRM7Q14831 915 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 AP5B1Q2VPB7 878 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 SLC9B1Q4ZJI4 515 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 TMEM35AQ53FP2 167 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 SPIN4Q56A73 249 aa11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 KHDRBS2Q5VWX1 349 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-208ENST00000538933 TMEM198Q66K66 360 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms