RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	NHSL2	Q5HYW2	709 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	YTHDF3	Q7Z739	585 aa	Known RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	CLNK	Q7Z7G1	428 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	CAND1	Q86VP6	1230 aa	Known RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	THOC6	Q86W42	341 aa	Known RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	SPNS2	Q8IVW8	549 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	CNPY4	Q8N129	248 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	C2CD4A	Q8NCU7	369 aa	Predicted RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	OR2L5	Q8NG80	312 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	ARL8A	Q96BM9	186 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	ART5	Q96L15	291 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	SERPINB12	Q96P63	405 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	QRFPR	Q96P65	431 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	NDN	Q99608	321 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	TIMP4	Q99727	224 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	WDR83	Q9BRX9	315 aa	Known RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	SFXN3	Q9BWM7	321 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	RBM24	Q9BX46	236 aa	Known RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	ALOXE3	Q9BYJ1	711 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	STMN4	Q9H169	189 aa	Predicted RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	COPS7B	Q9H9Q2	264 aa	Predicted RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	CALHM2	Q9HA72	323 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	NINJ2	Q9NZG7	142 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	ADAM21	Q9UKJ8	722 aa		11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	11.41	□□□□□ -0.58
CAPN1-223	ENST00000533079	JMJD1C	Q15652	2540 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	ANKRD33B	A6NCL7	494 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	CASK	O14936	926 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	CLEC3A	O75596	197 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	GUCA1C	O95843	209 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	GNAZ	P19086	355 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	TNNI3	P19429	210 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	SERPINB3	P29508	390 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	MAGEA3	P43357	314 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	TGM3	Q08188	693 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	ASPH	Q12797	758 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	PDAP1	Q13442	181 aa	Known RBP	11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	RCAN2	Q14206	197 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	POU4F3	Q15319	338 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	PPP1R3A	Q16821	1122 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	PRAMEF20	Q5VT98	475 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	VASN	Q6EMK4	673 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	TMIGD1	Q6UXZ0	262 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	CYS1	Q717R9	158 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	GALNT7	Q86SF2	657 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	CCDC25	Q86WR0	208 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	TDRP	Q86YL5	185 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZNF321P	Q8N8H1	164 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	FAM76A	Q8TAV0	307 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZNF721	Q8TF20	911 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	TRIB1	Q96RU8	372 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	CSF3R	Q99062	836 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	DOHH	Q9BU89	302 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	ROGDI	Q9GZN7	287 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	REXO4	Q9GZR2	422 aa	Known RBP	11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	LYRM4	Q9HD34	91 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	NDRG3	Q9UGV2	375 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	TRPS1	Q9UHF7	1281 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	CORO1C	Q9ULV4	474 aa	Predicted RBP	11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	SPACA6	W5XKT8	324 aa		11.4	□□□□□ -0.58
CAPN1-223	ENST00000533079	MXRA5	Q9NR99	2828 aa		11.4	□□□□□ -0.59
CAPN1-223	ENST00000533079		A0A087WUV0	522 aa	Predicted RBP	11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	COL6A5	A8TX70	2615 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	KDM4E	B2RXH2	506 aa	Predicted RBP	11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	SMAD7	O15105	426 aa	Known RBP	11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	H2AFY	O75367	372 aa	Known RBP	11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	TRIM3	O75382	744 aa	Predicted RBP	11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	CRLF1	O75462	422 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	C1QA	P02745	245 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	IGKV3-11	P04433	115 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	HPN	P05981	417 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	GSTA2	P09210	222 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	FBXO45	P0C2W1	286 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	TMIGD3	P0DMS9	266 aa	Predicted RBP	11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	CERS1	P27544	350 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	CPA2	P48052	419 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	TRPC1	P48995	793 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	PCYT1A	P49585	367 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	HNMT	P50135	292 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	CDKN2D	P55273	166 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	WNT3	P56703	355 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	CDKL1	Q00532	357 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	BIK	Q13323	160 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	KCTD19	Q17RG1	926 aa	Predicted RBP	11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	HSP90AA5P	Q58FG0	334 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	TTMP	Q5BVD1	217 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	ANKRD22	Q5VYY1	191 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	SCIMP	Q6UWF3	145 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	SBSN	Q6UWP8	590 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	LYPD8	Q6UX82	237 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	C20orf204	Q6ZNR8	217 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	C9orf40	Q8IXQ3	194 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	KRT78	Q8N1N4	520 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	RIBC1	Q8N443	379 aa	Predicted RBP	11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	ARFGAP2	Q8N6H7	521 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	FAM13C	Q8NE31	585 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	CCT6B	Q92526	530 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	TLCD1	Q96CP7	247 aa		11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	PDLIM5	Q96HC4	596 aa	Known RBP	11.39	□□□□□ -0.59
CAPN1-223	ENST00000533079	CCL19	Q99731	98 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms