RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 UTP23Q9BRU9 249 aaKnown RBP13.99□□□□□ -0.17
CPSF1-208ENST00000532560 TRIM45Q9H8W5 580 aaPredicted RBP13.99□□□□□ -0.17
CPSF1-208ENST00000532560 KCNK9Q9NPC2 374 aa13.99□□□□□ -0.17
CPSF1-208ENST00000532560 DNAJC15Q9Y5T4 150 aa13.99□□□□□ -0.17
CPSF1-208ENST00000532560 A0A1W2PS29 197 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 TMEM200CA6NKL6 621 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 TMEM233B4DJY2 109 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 PRKNO60260 465 aaPredicted RBP13.98□□□□□ -0.17
CPSF1-208ENST00000532560 PRAMEF2O60811 474 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 SERPINE1P05121 402 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 IL3P08700 152 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 ANXA4P09525 319 aaPredicted RBP13.98□□□□□ -0.17
CPSF1-208ENST00000532560 CPMP14384 443 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 DRD2P14416 443 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 BTKQ06187 659 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 ZNF763Q0D2J5 394 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 UGT3A2Q3SY77 523 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 SH2D4BQ5SQS7 431 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 CLYBLQ8N0X4 340 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 ZNF321PQ8N8H1 164 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 PPP1R14CQ8TAE6 165 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 SUN3Q8TAQ9 357 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 C16orf78Q8WTQ4 265 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 THAP3Q8WTV1 239 aaPredicted RBP13.98□□□□□ -0.17
CPSF1-208ENST00000532560 TWIST2Q8WVJ9 160 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 RIT1Q92963 219 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 SNRNP40Q96DI7 357 aaKnown RBP13.98□□□□□ -0.17
CPSF1-208ENST00000532560 BARD1Q99728 777 aaKnown RBP13.98□□□□□ -0.17
CPSF1-208ENST00000532560 EBPLQ9BY08 206 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 RASSF4Q9H2L5 321 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 TUBB1Q9H4B7 451 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 DLGAP4Q9Y2H0 992 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 FIS1Q9Y3D6 152 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 TRAF6Q9Y4K3 522 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 PCDHGB6Q9Y5F9 930 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 PTGDR2Q9Y5Y4 395 aa13.98□□□□□ -0.17
CPSF1-208ENST00000532560 FLNBO75369 2602 aaKnown RBP13.98□□□□□ -0.17
CPSF1-208ENST00000532560 SPENQ96T58 3664 aaKnown RBP13.97□□□□□ -0.17
CPSF1-208ENST00000532560 TMEM114B3SHH9 223 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 RGS14O43566 566 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 ITGA10O75578 1167 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 FAM107AO95990 144 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 ATP1B1P05026 303 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 PORP16435 677 aaPredicted RBP13.97□□□□□ -0.17
CPSF1-208ENST00000532560 CD96P40200 585 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 ALDH9A1P49189 494 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 XKP51811 444 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 SLC18A1P54219 525 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 MAGOHP61326 146 aaKnown RBP13.97□□□□□ -0.17
CPSF1-208ENST00000532560 RNF4P78317 190 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 HEPACAMQ14CZ8 416 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 OR1C1Q15619 314 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 CHI3L2Q15782 390 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 CES4AQ5XG92 561 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 Q6ZSR9 355 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 GALNT12Q8IXK2 581 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 CISD2Q8N5K1 135 aaKnown RBP13.97□□□□□ -0.17
CPSF1-208ENST00000532560 HORMAD2Q8N7B1 307 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 OR2T11Q8NH01 316 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 NUBPLQ8TB37 319 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 KLHL29Q96CT2 875 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 SIGLEC12Q96PQ1 595 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 CNPPD1Q9BV87 410 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 CXorf21Q9HAI6 301 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 MYNNQ9NPC7 610 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.97□□□□□ -0.173e-6■■■□□ 15
CPSF1-208ENST00000532560 C1orf109Q9NX04 203 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 ANKRD10Q9NXR5 420 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 EHD3Q9NZN3 535 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 MYOTQ9UBF9 498 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 HEY2Q9UBP5 337 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 PSME2Q9UL46 239 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 YARS2Q9Y2Z4 477 aaKnown RBP13.97□□□□□ -0.17
CPSF1-208ENST00000532560 COPG1Q9Y678 874 aaKnown RBP13.97□□□□□ -0.17
CPSF1-208ENST00000532560 SHANK1Q9Y566 2161 aa13.97□□□□□ -0.17
CPSF1-208ENST00000532560 HELZ2Q9BYK8 2649 aaKnown RBP13.97□□□□□ -0.17
CPSF1-208ENST00000532560 TMEM120BA0PK00 339 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 WDR91A4D1P6 747 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 PYCARD-AS1I3L0S3 204 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 HRKO00198 91 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 PIP5K1BO14986 540 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 NEURL1O76050 574 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 SNUPNO95149 360 aaKnown RBP13.96□□□□□ -0.17
CPSF1-208ENST00000532560 WISP1O95388 367 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 CLPSP04118 112 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 CSNK2A2P19784 350 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-208ENST00000532560 GRK2P25098 689 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 CYB561P49447 251 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 HLCSP50747 726 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 SSR4P51571 173 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 HK2P52789 917 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 ERVK-8P63133 956 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 OC90Q02509 493 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-208ENST00000532560 ZNF267Q14586 743 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-208ENST00000532560 KIAA0040Q15053 153 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 NR6A1Q15406 480 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 IGFBP7Q16270 282 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 XKR7Q5GH72 579 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 ZNF766Q5HY98 468 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 ZNF468Q5VIY5 522 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms