RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 NCK1P16333 377 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ENGP17813 658 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ITPKAP23677 461 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ITGA3P26006 1051 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 SLC6A1P30531 599 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 CBSP35520 551 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 HTR5AP47898 357 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 GNG10P50151 68 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 CCR9P51686 369 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 TNFRSF17Q02223 184 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 NHLH2Q02577 135 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 SLC25A11Q02978 314 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 CRYZQ08257 329 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 ZNF252P-AS1Q0IIN9 211 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 IFRD2Q12894 506 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 GAGE1Q13065 139 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 SGCGQ13326 291 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 CAMK2GQ13555 558 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 RAB33AQ14088 237 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 HABP2Q14520 560 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 GBX1Q14549 363 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 GANABQ14697 944 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 UBXN2BQ14CS0 331 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ZNF239Q16600 458 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 SYTL3Q4VX76 610 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ARHGAP15Q53QZ3 475 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 SPIN4Q56A73 249 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ADGRF1Q5T601 910 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 HEATR6Q6AI08 1181 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 FRMPD2BQ6IN97 320 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 MSANTD1Q6ZTZ1 278 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 LARP4Q71RC2 724 aaKnown RBP eCLIP5.54□□□□□ -1.52
CD44-225ENST00000527326 CMC1Q7Z7K0 106 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 NAA40Q86UY6 237 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ZFAND4Q86XD8 727 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 LDLRAD3Q86YD5 345 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 CCDC71Q8IV32 467 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 DCUN1D3Q8IWE4 304 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 Q8N402 240 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ZNF561Q8N587 486 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 DCBLD1Q8N8Z6 715 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 TMEM145Q8NBT3 493 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 KCTD6Q8NC69 237 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 FAM46DQ8NEK8 389 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 PXT1Q8NFP0 134 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 OR9Q1Q8NGQ5 310 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 OR5J2Q8NH18 312 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 OR1S1Q8NH92 325 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 MOSPD2Q8NHP6 518 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 COQ8AQ8NI60 647 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 POC1BQ8TC44 478 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 C2CD4CQ8TF44 421 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 SELENOMQ8WWX9 145 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 SLC25A46Q96AG3 418 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ORAI1Q96D31 301 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 R3HDM4Q96D70 268 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 PABPC5Q96DU9 382 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 ZBED6CLQ96FA7 236 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 CERS2Q96G23 380 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 CPB2Q96IY4 423 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ZNF558Q96NG5 402 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ZNF599Q96NL3 588 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 FCRL3Q96P31 734 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 HBEGFQ99075 208 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 LGMNQ99538 433 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 TSNAXQ99598 290 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 PINK1Q9BXM7 581 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ENKD1Q9H0I2 346 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 CCDC86Q9H6F5 360 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 RNF167Q9H6Y7 350 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ACTR8Q9H981 624 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 SPACA1Q9HBV2 294 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ABCB9Q9NP78 766 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ZDHHC4Q9NPG8 344 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 AKAP7Q9P0M2 348 aaPredicted RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 PPIEQ9UNP9 301 aaKnown RBP5.54□□□□□ -1.52
CD44-225ENST00000527326 CLCA2Q9UQC9 943 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 PKP3Q9Y446 797 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 ZNF451Q9Y4E5 1061 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 LTN1O94822 1766 aa5.54□□□□□ -1.52
CD44-225ENST00000527326 A0A096LPE4 126 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 A0A1W2PPZ6 126 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 A0A1W2PQL4 384 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 UBA6A0AVT1 1052 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 WDR27A2RRH5 827 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 NUDT19A8MXV4 375 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 MYO1GB0I1T2 1018 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ISM1B1AKI9 464 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 KDM4EB2RXH2 506 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 C5orf58C9J3I9 102 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 F8VP50 259 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 FZD9O00144 591 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 DCLK1O15075 740 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 TXNL1O43396 289 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 DLX3O60479 287 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 NSA2O95478 260 aaKnown RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 AGR2O95994 175 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 OTCP00480 354 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 HMGCRP04035 888 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 F13BP05160 661 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms