RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SEPT1Q8WYJ6 367 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 STARD8Q92502 1023 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 RAPGEF5Q92565 580 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 SPSB1Q96BD6 273 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 PGAP3Q96FM1 320 aaPredicted RBP3.21□□□□□ -1.9
CD44-217ENST00000525348 PDLIM5Q96HC4 596 aaKnown RBP3.21□□□□□ -1.9
CD44-217ENST00000525348 VPS39Q96JC1 886 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 CCDC42Q96M95 316 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 GAL3ST4Q96RP7 486 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 TSC22D3Q99576 134 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 NDNQ99608 321 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 NUSAP1Q9BXS6 441 aaKnown RBP3.21□□□□□ -1.9
CD44-217ENST00000525348 YIPF3Q9GZM5 350 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 PARLQ9H300 379 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 GORASP2Q9H8Y8 452 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 FANCEQ9HB96 536 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 PRR34Q9NV39 138 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 ANO10Q9NW15 660 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 PAQR5Q9NXK6 330 aaPredicted RBP3.21□□□□□ -1.9
CD44-217ENST00000525348 MIS18AQ9NYP9 233 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 TAS2R7Q9NYW3 318 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 MBD2Q9UBB5 411 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 CTSZQ9UBR2 303 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 ELF5Q9UKW6 265 aaPredicted RBP3.21□□□□□ -1.9
CD44-217ENST00000525348 HECW1Q76N89 1606 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 ABCA9Q8IUA7 1624 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 HEG1Q9ULI3 1381 aa3.21□□□□□ -1.9
CD44-217ENST00000525348 NPATQ14207 1427 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 NCOA1Q15788 1441 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 SMG6Q86US8 1419 aaKnown RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 EFCAB5A4FU69 1503 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 ARHGEF12Q9NZN5 1544 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 C1orf232A0A0U1RR37 186 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 MAGEB16A2A368 324 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 RGSL1A5PLK6 1076 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 OR6C74A6NCV1 312 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 URADA6NGE7 173 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 H3BQV1 296 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 K7EQD1 137 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 MAGEB3O15480 346 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 NDUFA2O43678 99 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 TOM1O60784 492 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 NXPH4O95158 308 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 SERPING1P05155 500 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 SNRPAP09012 282 aaKnown RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 FOLR2P14207 255 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 GDI1P31150 447 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 SERPINB6P35237 376 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 CAPZA2P47755 286 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 NOP14P78316 857 aaKnown RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 OPCMLQ14982 345 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 SGCAQ16586 387 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 LRIT3Q3SXY7 679 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 CCDC40Q4G0X9 1142 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 LACTB2Q53H82 288 aaPredicted RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 CLVS2Q5SYC1 327 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 PDPK2PQ6A1A2 396 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 RFPL4BQ6ZWI9 263 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 ANKRD33Q7Z3H0 272 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 SH2D6Q7Z4S9 175 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 TLK2Q86UE8 772 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 VPS36Q86VN1 386 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 ERICH1Q86X53 443 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 RCOR2Q8IZ40 523 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 TTC5Q8N0Z6 440 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 GPC2Q8N158 579 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 FBXL16Q8N461 479 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 NATD1Q8N6N6 113 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 PI4KAP1Q8N8J0 262 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 KCTD6Q8NC69 237 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 OR5T2Q8NGG2 359 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 MAIP1Q8WWC4 291 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 METTL21AQ8WXB1 218 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 IFT81Q8WYA0 676 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 CASP10Q92851 521 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 CCDC127Q96BQ5 260 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 SPATA33Q96N06 139 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 RUNDC3BQ96NL0 473 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 CDCA3Q99618 268 aaPredicted RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 TSG101Q99816 390 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 SLF1Q9BQI6 1058 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 GCOM2Q9BZD3 368 aaPredicted RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 API5Q9BZZ5 524 aaKnown RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 RHBGQ9H310 441 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 SNX25Q9H3E2 840 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 PARVBQ9HBI1 364 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 NEK6Q9HC98 313 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 RAVER2Q9HCJ3 691 aaKnown RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 C12orf4Q9NQ89 552 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 TXNDC16Q9P2K2 825 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 LNPEPQ9UIQ6 1025 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 ERVK-19Q9WJR5 959 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 FAM32AQ9Y421 112 aaKnown RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 FADS3Q9Y5Q0 445 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 CACNG2Q9Y698 323 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 ZFP37Q9Y6Q3 630 aaPredicted RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 DENND4BO75064 1496 aaPredicted RBP3.2□□□□□ -1.9
CD44-217ENST00000525348 NLRP1Q9C000 1473 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 GON4LQ3T8J9 2241 aa3.2□□□□□ -1.9
CD44-217ENST00000525348 CNTLNQ9NXG0 1405 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms