RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ZNF317Q96PQ6 595 aaPredicted RBP9.4□□□□□ -0.9
NUP54-203ENST00000504173 OR52B2Q96RD2 323 aa9.4□□□□□ -0.9
NUP54-203ENST00000504173 TCF7L2Q9NQB0 619 aa9.4□□□□□ -0.9
NUP54-203ENST00000504173 MIEF1Q9NQG6 463 aa9.4□□□□□ -0.9
NUP54-203ENST00000504173 NECTIN3Q9NQS3 549 aa9.4□□□□□ -0.9
NUP54-203ENST00000504173 ASIC5Q9NY37 505 aa9.4□□□□□ -0.9
NUP54-203ENST00000504173 C5AR2Q9P296 337 aa9.4□□□□□ -0.9
NUP54-203ENST00000504173 HEY2Q9UBP5 337 aa9.4□□□□□ -0.9
NUP54-203ENST00000504173 BAIAP2L1Q9UHR4 511 aa9.4□□□□□ -0.9
NUP54-203ENST00000504173 HS3ST3B1Q9Y662 390 aa9.4□□□□□ -0.9
NUP54-203ENST00000504173 IGKV3D-11A0A0A0MRZ8 115 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 A0A0G2JND7 137 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 MYOCOSA0A1B0GUC4 107 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 TCRBV16S1A1N1A0A5B0 115 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 SYNDIG1LA6NDD5 238 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 PGRMC2O15173 223 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 AKAP10O43572 662 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 FGF17O60258 216 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 ERAL1O75616 437 aaKnown RBP9.39□□□□□ -0.91
NUP54-203ENST00000504173 LRATO95237 230 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 IFNA16P05015 189 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 G6PDP11413 515 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 DDCP20711 480 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 PIK3R1P27986 724 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 LSP1P33241 339 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 HPCAL1P37235 193 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 DIO3P55073 304 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 OR4D2P58180 307 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 FOLH1Q04609 750 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 SF3A3Q12874 501 aaKnown RBP eCLIP9.39□□□□□ -0.91
NUP54-203ENST00000504173 ATP1A4Q13733 1029 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 SERTAD2Q14140 314 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 PTGR1Q14914 329 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 CRTC2Q53ET0 693 aaPredicted RBP9.39□□□□□ -0.91
NUP54-203ENST00000504173 ATP1A1-AS1Q5TC04 95 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 SLC48A1Q6P1K1 146 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 BORAQ6PGQ7 559 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 TMEM205Q6UW68 189 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 CPEB2Q7Z5Q1 589 aaKnown RBP9.39□□□□□ -0.91
NUP54-203ENST00000504173 ANKRD37Q7Z713 158 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 OR4N5Q8IXE1 308 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 FAM9CQ8IZT9 166 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 C7orf57Q8NEG2 295 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 OR4K14Q8NGD5 310 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 DNAJB14Q8TBM8 379 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 ADAMTS17Q8TE56 1095 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 THAP4Q8WY91 577 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 UCN3Q969E3 161 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 EXOSC8Q96B26 276 aaKnown RBP9.39□□□□□ -0.91
NUP54-203ENST00000504173 NACC2Q96BF6 587 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 ANKRD9Q96BM1 317 aaPredicted RBP9.39□□□□□ -0.91
NUP54-203ENST00000504173 C8orf44Q96CB5 159 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 KLHL29Q96CT2 875 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 EGLN2Q96KS0 407 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 EBF4Q9BQW3 602 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 CCDC28BQ9BUN5 200 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 ALOXE3Q9BYJ1 711 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 NSRP1Q9H0G5 558 aaKnown RBP9.39□□□□□ -0.91
NUP54-203ENST00000504173 PNO1Q9NRX1 252 aaKnown RBP9.39□□□□□ -0.91
NUP54-203ENST00000504173 P4HTMQ9NXG6 502 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 EHD3Q9NZN3 535 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 UTS2RQ9UKP6 389 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 PSME2Q9UL46 239 aa9.39□□□□□ -0.91
NUP54-203ENST00000504173 G3BP2Q9UN86 482 aaKnown RBP9.39□□□□□ -0.91
NUP54-203ENST00000504173 LOC102723996A0A087X1L8 192 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 IGHV3-20A0A0C4DH32 117 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 WASHC1A8K0Z3 465 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 A8MUA0 341 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 E9PBE3 544 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 TGFBR3LH3BV60 316 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 SOCS6O14544 535 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 UBDO15205 165 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 OR10H2O60403 315 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 KLHL41O60662 606 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 GPR75O95800 540 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 CLDN1O95832 211 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 FURINP09958 794 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 ALDOCP09972 364 aaKnown RBP9.38□□□□□ -0.91
NUP54-203ENST00000504173 DDX5P17844 614 aaKnown RBP9.38□□□□□ -0.91
NUP54-203ENST00000504173 RPL3P39023 403 aaKnown RBP9.38□□□□□ -0.91
NUP54-203ENST00000504173 UQCRFS1P47985 274 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 XKP51811 444 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 SEC24CP53992 1094 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 POLE2P56282 527 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 IGLV3-21P80748 117 aaPredicted RBP9.38□□□□□ -0.91
NUP54-203ENST00000504173 PLIN5Q00G26 463 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 BIKQ13323 160 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 RPS6KA2Q15349 733 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 SFT2D3Q587I9 215 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 TMEM198Q66K66 360 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 CGB2Q6NT52 195 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 KIRREL2Q6UWL6 708 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 R3HCC1LQ7Z5L2 792 aaKnown RBP9.38□□□□□ -0.91
NUP54-203ENST00000504173 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.38□□□□□ -0.91
NUP54-203ENST00000504173 STON2Q8WXE9 905 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 NANOS1Q8WY41 292 aaKnown RBP9.38□□□□□ -0.91
NUP54-203ENST00000504173 PPCDCQ96CD2 204 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 MARK4Q96L34 752 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 RILPQ96NA2 401 aa9.38□□□□□ -0.91
NUP54-203ENST00000504173 DGAT2Q96PD7 388 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms