RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 RBPJQ06330 500 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 TMEM115Q12893 351 aaPredicted RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 TFDP2Q14188 446 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 GPR18Q14330 331 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 KRT81Q14533 505 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 PTGR1Q14914 329 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 CAMK4Q16566 473 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 DPCR1Q3MIW9 517 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 TCTE1Q5JU00 501 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 C6orf10Q5SRN2 563 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 AGAP7PQ5VUJ5 663 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 ISM2Q6H9L7 571 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 PWWP2BQ6NUJ5 590 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 ADGRG6Q86SQ4 1221 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 NT5DC3Q86UY8 548 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 TMEM126BQ8IUX1 230 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 LAS2Q8IYD9 372 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 PGBD5Q8N414 524 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 ENDOVQ8N8Q3 282 aaKnown RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 C7orf57Q8NEG2 295 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 OR1N1Q8NGS0 311 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 OR2Y1Q8NGV0 311 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 OR2L2Q8NH16 312 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 SLC20A1Q8WUM9 679 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 PEX13Q92968 403 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 ZNF501Q96CX3 271 aaPredicted RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 CELF6Q96J87 481 aaKnown RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 MARK4Q96L34 752 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 AGAP4Q96P64 663 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 TGM7Q96PF1 710 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 GBP5Q96PP8 586 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 TRIB3Q96RU7 358 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 SPATA16Q9BXB7 569 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 RAB11FIP5Q9BXF6 653 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 FAM129AQ9BZQ8 928 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 EPS8L2Q9H6S3 715 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 NLRC4Q9NPP4 1024 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 RASSF1Q9NS23 344 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.68□□□□□ -1.82
USP54-217ENST00000498213 SEPT11Q9NVA2 429 aaKnown RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 HRASLS2Q9NWW9 162 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 OGFRQ9NZT2 677 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 ZNF624Q9P2J8 865 aaPredicted RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 ZNF580Q9UK33 172 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 UTS2RQ9UKP6 389 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 POMT2Q9UKY4 750 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 PKP3Q9Y446 797 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 KLK4Q9Y5K2 254 aa3.68□□□□□ -1.82
USP54-217ENST00000498213 INTS1Q8N201 2190 aaKnown RBP3.68□□□□□ -1.82
USP54-217ENST00000498213 TRBV5-3A0A0A0MS03 114 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TRAV17A0A0B4J275 112 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 LOC285095A0A1B0GVY8 99 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 C2orf81A6NN90 581 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 HACD1B0YJ81 288 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 H7C0S8 307 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 RHODO00212 210 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TXNDC9O14530 226 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 SRPX2O60687 465 aaPredicted RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 CLDN7O95471 211 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 ALDOAP04075 364 aaKnown RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 SERPING1P05155 500 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 CYP1A2P05177 515 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 ITGA5P08648 1049 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 HOXD4P09016 255 aaPredicted RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 H2AFZP0C0S5 128 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 PNMA6AP0CW24 399 aaPredicted RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 CYP2A7P20853 494 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 UGT1A4P22310 534 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 SHMT2P34897 504 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 PPARGP37231 505 aaPredicted RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 POLD2P49005 469 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 PRLHRP49683 370 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 THBS3P49746 956 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 ARSEP51690 589 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 ALDH18A1P54886 795 aaKnown RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 TPM4P67936 248 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 DCDP81605 110 aaKnown RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 OGDHQ02218 1023 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 SLC25A11Q02978 314 aaKnown RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 KLHL30Q0D2K2 578 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 XRCC4Q13426 336 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TRIM14Q14142 442 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 KIR2DS3Q14952 304 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 RPE65Q16518 533 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 STX1AQ16623 288 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TEX44Q53QW1 395 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 KRTCAP3Q53RY4 240 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 C2CD6Q53TS8 623 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 PLEKHS1Q5SXH7 462 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 NCBP2-AS2Q69YL0 99 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 LCN10Q6JVE6 187 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 NIPAL1Q6NVV3 410 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 IRGCQ6NXR0 463 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 PRMT9Q6P2P2 845 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 DOK6Q6PKX4 331 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 SASS6Q6UVJ0 657 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 C16orf89Q6UX73 402 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 LEKR1Q6ZMV7 388 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 H2AFVQ71UI9 128 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TSPAN33Q86UF1 283 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms