RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 SPRP35270 261 aaPredicted RBP2.7□□□□□ -1.98
VPS50-219ENST00000495039 PRELPP51888 382 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 MEF2DQ14814 521 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 SLC17A1Q14916 467 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 HEPACAMQ14CZ8 416 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 OR1C1Q15619 314 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 TRADDQ15628 312 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 STX1AQ16623 288 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 POM121L1PQ3SYA9 428 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 HERC4Q5GLZ8 1057 aaPredicted RBP2.7□□□□□ -1.98
VPS50-219ENST00000495039 C1orf189Q5VU69 101 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 EMBQ6PCB8 327 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 FBXW8Q8N3Y1 598 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 ZNF781Q8N8C0 355 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 GOLGA5Q8TBA6 731 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 BCL2L2Q92843 193 aaPredicted RBP2.7□□□□□ -1.98
VPS50-219ENST00000495039 ESAMQ96AP7 390 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 PHYHIPLQ96FC7 376 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 C5orf30Q96GV9 206 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 CDHR1Q96JP9 859 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 CCDC43Q96MW1 224 aaKnown RBP2.7□□□□□ -1.98
VPS50-219ENST00000495039 RAB40CQ96S21 281 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 AGPAT1Q99943 283 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 NTMT1Q9BV86 223 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 NUSAP1Q9BXS6 441 aaKnown RBP2.7□□□□□ -1.98
VPS50-219ENST00000495039 WWP1Q9H0M0 922 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 PNNQ9H307 717 aaKnown RBP2.7□□□□□ -1.98
VPS50-219ENST00000495039 PNPLA3Q9NST1 481 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 FOXA2Q9Y261 457 aaPredicted RBP2.7□□□□□ -1.98
VPS50-219ENST00000495039 CPQQ9Y646 472 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 A0A1B0GTH9 108 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 ZNF724A8MTY0 619 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 HDAC3O15379 428 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 CSDE1O75534 798 aaKnown RBP2.69□□□□□ -1.98
VPS50-219ENST00000495039 CT45A8P0DMV1 189 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 CT45A9P0DMV2 189 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 CASP3P42574 277 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 GSK3BP49841 420 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 TNFSF10P50591 281 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 RPL27P61353 136 aaKnown RBP2.69□□□□□ -1.98
VPS50-219ENST00000495039 C17orf67Q0P5P2 114 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 ITPK1Q13572 414 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 TMEM44Q2T9K0 475 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 WSCD2Q2TBF2 565 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 CT45A2Q5DJT8 189 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 NUFIP2Q7Z417 695 aaKnown RBP2.69□□□□□ -1.98
VPS50-219ENST00000495039 GVQW1Q8N7I0 195 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 SIDT2Q8NBJ9 832 aaKnown RBP2.69□□□□□ -1.98
VPS50-219ENST00000495039 ICA1LQ8NDH6 482 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 OR4Q3Q8NH05 313 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 OR4L1Q8NH43 312 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 ST7LQ8TDW4 575 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 MRPL24Q96A35 216 aaKnown RBP2.69□□□□□ -1.98
VPS50-219ENST00000495039 C16orf58Q96GQ5 468 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 CXorf58Q96LI9 332 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 ZNF285Q96NJ3 590 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 RUNDC3BQ96NL0 473 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 HSD17B14Q9BPX1 270 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 MRPL9Q9BYD2 267 aaKnown RBP2.69□□□□□ -1.98
VPS50-219ENST00000495039 TSPYL1Q9H0U9 437 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 LIME1Q9H400 295 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 NT5DC2Q9H857 520 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 GDF3Q9NR23 364 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 ZCCHC3Q9NUD5 404 aaKnown RBP2.69□□□□□ -1.98
VPS50-219ENST00000495039 ZNF346Q9UL40 294 aaKnown RBP2.69□□□□□ -1.98
VPS50-219ENST00000495039 SPATA2Q9UM82 520 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 FBXO7Q9Y3I1 522 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 SNX5Q9Y5X3 404 aa2.69□□□□□ -1.98
VPS50-219ENST00000495039 IGHV3-16A0A0C4DH30 117 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 TEX48A0A1B0GUV7 120 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 C5orf51A6NDU8 294 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 DUSP11O75319 330 aaKnown RBP2.68□□□□□ -1.98
VPS50-219ENST00000495039 ANXA9O76027 345 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 STBD1O95210 358 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 TPBGLP0DKB5 382 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 ZNF32P17041 273 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 ALDH3B1P43353 468 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 ADARP55265 1226 aaKnown RBP2.68□□□□□ -1.98
VPS50-219ENST00000495039 UCP2P55851 309 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 GSTO1P78417 241 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 HSPA14Q0VDF9 509 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 PDE7AQ13946 482 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 KRT31Q15323 416 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 P2RY14Q15391 338 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 MPPE1Q53F39 396 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 DDI2Q5TDH0 399 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 LIPJQ5W064 366 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 VASH2Q86V25 355 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 LRRC49Q8IUZ0 686 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 STHQ8IWL8 128 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 SAMD12Q8N8I0 201 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 ZNRF1Q8ND25 227 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 SPAG8Q99932 426 aaPredicted RBP2.68□□□□□ -1.98
VPS50-219ENST00000495039 FAM213AQ9BRX8 229 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 SLC26A1Q9H2B4 701 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 GANQ9H2C0 597 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 CXXC4Q9H2H0 198 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 DPEP3Q9H4B8 488 aa2.68□□□□□ -1.98
VPS50-219ENST00000495039 DDX28Q9NUL7 540 aaKnown RBP2.68□□□□□ -1.98
VPS50-219ENST00000495039 COMMD8Q9NX08 183 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms