RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 OR6C4Q8NGE1 309 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZNF675Q8TD23 568 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DNAJA4Q8WW22 397 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SGCDQ92629 289 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 REPS1Q96D71 796 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RSPRY1Q96DX4 576 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 KCNC2Q96PR1 638 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 LGR4Q9BXB1 951 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 POLR2J2Q9GZM3 115 aaKnown RBP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 KLHL1Q9NR64 748 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SDR39U1Q9NRG7 319 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 UBQLN2Q9UHD9 624 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MED16Q9Y2X0 877 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CHD7Q9P2D1 2997 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DLGAP1O14490 977 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CTDSP2O14595 271 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GNB5O14775 395 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SUV39H1O43463 412 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 APOC3P02656 99 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ALAS2P22557 587 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DDX6P26196 483 aaKnown RBP eCLIP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MAP2K3P46734 347 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 UGT8Q16880 541 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DEFB110Q30KQ9 67 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GDPD3Q7L5L3 318 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 VWA5B2Q8N398 1253 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TMEM203Q969S6 136 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CIDECQ96AQ7 238 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLCO4A1Q96BD0 722 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 COL21A1Q96P44 957 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FCRL4Q96PJ5 515 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PDCD10Q9BUL8 212 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CHIAQ9BZP6 476 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RNF121Q9H920 327 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TPT1P8Q9HAU6 139 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SMURF1Q9HCE7 757 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NLKQ9UBE8 527 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZNF225Q9UK10 706 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PCDHB14Q9Y5E9 798 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PIKFYVEQ9Y2I7 2098 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CARNS1A5YM72 827 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FAM220BPB1ANY3 271 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MITFO75030 526 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GSTM5P46439 218 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 EIF4EBP2Q13542 120 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZDHHC20Q5W0Z9 365 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ANKRD54Q6NXT1 300 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 LILRA6Q6PI73 481 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TMEFF1Q8IYR6 380 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DTWD1Q8N5C7 304 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TRAM1L1Q8N609 369 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 OR7G3Q8NG95 312 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 OR9A1PQ8NGU1 263 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 WFIKKN2Q8TEU8 576 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZNF480Q8WV37 535 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SPACA7Q96KW9 195 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 WACQ9BTA9 647 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 BRINP2Q9C0B6 783 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PPA2Q9H2U2 334 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TM9SF3Q9HD45 589 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ATP13A2Q9NQ11 1180 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RIMKLBQ9ULI2 386 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 EDARQ9UNE0 448 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ENTPD4Q9Y227 616 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TCRBV21S2A2A0A5A6 115 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 WASHC1A8K0Z3 465 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CDRT1O95170 752 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TSPAN12O95859 305 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NUDT7P0C024 238 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HTR1EP28566 365 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 STARP49675 285 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 AP1S2P56377 157 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 B4GALNT1Q00973 533 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MPP7Q5T2T1 576 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 OR2T5Q6IEZ7 315 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZNF613Q6PF04 617 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 WASH2PQ6VEQ5 465 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 Q6ZNB5 142 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 LINC00299Q6ZSB3 139 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MEX3DQ86XN8 651 aaKnown RBP10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 OR2T29Q8NH02 315 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ANGPTL6Q8NI99 470 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC35A5Q9BS91 424 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 C1QTNF7Q9BXJ2 289 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SRMSQ9H3Y6 488 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 POPDC3Q9HBV1 291 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ADAP2Q9NPF8 381 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PCDHB16Q9NRJ7 776 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CUEDC1Q9NWM3 386 aaPredicted RBP10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 YBX2Q9Y2T7 364 aaKnown RBP10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GPR45Q9Y5Y3 372 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 UNC13CQ8NB66 2214 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRB8 838 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PI15O43692 258 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RB1P06400 928 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PROS1P07225 676 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HOXB6P17509 224 aaKnown RBP10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 AOAHP28039 575 aa10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 POLR2IP36954 125 aaKnown RBP10.24□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 P2RY2P41231 377 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms