RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ADGRE2Q9UHX3 823 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 PHF11Q9UIL8 331 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 PCDHGB3Q9Y5G1 929 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 NINQ8N4C6 2090 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 A0A0A6YYD5 115 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 IQANK1A0A1B0GTG1 560 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 FAM187AA6NFU0 413 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 WASHC1A8K0Z3 465 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 PROM1O43490 865 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 TMPRSS11DO60235 418 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 EEDO75530 441 aaKnown RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 GSTA2P09210 222 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 LTA4HP09960 611 aaKnown RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 EPB42P16452 691 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 SERPINB3P29508 390 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 TLX1P31314 330 aaPredicted RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 BUD31P41223 144 aaPredicted RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 PIK3CBP42338 1070 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 TRPC1P48995 793 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 RPS13P62277 151 aaKnown RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 ZNF267Q14586 743 aaPredicted RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 NTRK2Q16620 822 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 KRTAP21-3Q3LHN1 58 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 MRM1Q6IN84 353 aaKnown RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 RNF111Q6ZNA4 994 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 SLC29A4Q7RTT9 530 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 TBC1D1Q86TI0 1168 aaPredicted RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 TEX9Q8N6V9 391 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 PPM1NQ8N819 430 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 NAXEQ8NCW5 288 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 NXNL1Q96CM4 212 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 JSRP1Q96MG2 331 aaPredicted RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 FOXC2Q99958 501 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 PELOQ9BRX2 385 aaKnown RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 CENPKQ9BS16 269 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 ERP44Q9BS26 406 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 DOHHQ9BU89 302 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 POLDIP3Q9BY77 421 aaKnown RBP11.39□□□□□ -0.59
CPSF3-204ENST00000489403 LIME1Q9H400 295 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 NMRAL1Q9HBL8 299 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 CRIM1Q9NZV1 1036 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 TSC22D4Q9Y3Q8 395 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 ASB4Q9Y574 426 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 VPS13CQ709C8 3753 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 FREM3P0C091 2139 aa11.39□□□□□ -0.59
CPSF3-204ENST00000489403 A0A1W2PS29 197 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 FAM221AA4D161 298 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 LRRC14BA6NHZ5 514 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 GLOD5A6NK44 160 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 OR6C76A6NM76 312 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 HSPB2A8KAH6 182 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 KDM4EB2RXH2 506 aaPredicted RBP11.38□□□□□ -0.59
CPSF3-204ENST00000489403 RAD51CO43502 376 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 OR10H2O60403 315 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 TRIM3O75382 744 aaPredicted RBP11.38□□□□□ -0.59
CPSF3-204ENST00000489403 GPR75O95800 540 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 CD99P14209 185 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 GDF1P27539 372 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 CRABP2P29373 138 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 BSGP35613 385 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 KIR2DL3P43628 341 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 ARFIP1P53367 373 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 WNT3P56703 355 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 IRF9Q00978 393 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 CRYZQ08257 329 aaKnown RBP11.38□□□□□ -0.59
CPSF3-204ENST00000489403 SETDB1Q15047 1291 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 HSPB2Q16082 182 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 ACSF3Q4G176 576 aaPredicted RBP11.38□□□□□ -0.59
CPSF3-204ENST00000489403 LIPJQ5W064 366 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 MYLK4Q86YV6 388 aaPredicted RBP11.38□□□□□ -0.59
CPSF3-204ENST00000489403 CENPLQ8N0S6 344 aaPredicted RBP11.38□□□□□ -0.59
CPSF3-204ENST00000489403 LIX1Q8N485 282 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 ZNF441Q8N8Z8 693 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 KCTD4Q8WVF5 259 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 RIT1Q92963 219 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 UCN3Q969E3 161 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 POM121Q96HA1 1249 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 ZNF597Q96LX8 424 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 SH3GL2Q99962 352 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 CLEC4MQ9H2X3 399 aaPredicted RBP11.38□□□□□ -0.59
CPSF3-204ENST00000489403 RASSF1Q9NS23 344 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 RYDENQ9NUL5 291 aaKnown RBP11.38□□□□□ -0.59
CPSF3-204ENST00000489403 LYARQ9NX58 379 aaKnown RBP11.38□□□□□ -0.59
CPSF3-204ENST00000489403 RNF14Q9UBS8 474 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 ST6GALNAC2Q9UJ37 374 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 PCDHGA11Q9Y5H2 935 aa11.38□□□□□ -0.59
CPSF3-204ENST00000489403 EXPH5Q8NEV8 1989 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 KIAA1549Q9HCM3 1950 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 SPG11Q96JI7 2443 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 C15orf38-AP3S2A0A0A6YYH1 394 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 A0A1W2PR48 441 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 SYCE1LA8MT33 242 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 H0YIV9 168 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 SYT5O00445 386 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 AIFM1O95831 613 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 FAM58BPP0C7Q3 252 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 NR2F6P10588 404 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 BMP5P22003 454 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 SSTR4P31391 388 aa11.37□□□□□ -0.59
CPSF3-204ENST00000489403 UQCRC1P31930 480 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms