RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 MMP25Q9NPA2 562 aa7.74□□□□□ -1.17
SF3A1-208ENST00000485618 SLC35C2Q9NQQ7 365 aa7.74□□□□□ -1.17
SF3A1-208ENST00000485618 NECTIN3Q9NQS3 549 aa7.74□□□□□ -1.17
SF3A1-208ENST00000485618 ASIC5Q9NY37 505 aa7.74□□□□□ -1.17
SF3A1-208ENST00000485618 SH3BP4Q9P0V3 963 aa7.74□□□□□ -1.17
SF3A1-208ENST00000485618 MARCOQ9UEW3 520 aaPredicted RBP7.74□□□□□ -1.17
SF3A1-208ENST00000485618 PCDHGB4Q9UN71 923 aa7.74□□□□□ -1.17
SF3A1-208ENST00000485618 CCL27Q9Y4X3 112 aa7.74□□□□□ -1.17
SF3A1-208ENST00000485618 POLR3HQ9Y535 204 aaPredicted RBP7.74□□□□□ -1.17
SF3A1-208ENST00000485618 PCDHGA9Q9Y5G4 932 aaKnown RBP7.74□□□□□ -1.17
SF3A1-208ENST00000485618 USH1CQ9Y6N9 552 aa7.74□□□□□ -1.17
SF3A1-208ENST00000485618 CFAP46Q8IYW2 2715 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 CCDC88CQ9P219 2028 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 DYTNA2CJ06 578 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 GLOD5A6NK44 160 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 OR6C76A6NM76 312 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 A8MUI8 341 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 TCP11X1B4DZS4 312 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 FCHO1O14526 889 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 PGRMC2O15173 223 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 POLR3GO15318 223 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 FGF17O60258 216 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 DIAPH2O60879 1101 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 LDB3O75112 727 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 SOX30O94993 753 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 FURINP09958 794 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 PRR35P0CG20 571 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 CPMP14384 443 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 IDO1P14902 403 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 NT5EP21589 574 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 MDH1P40925 334 aaKnown RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 CASRP41180 1078 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 SLC26A5P58743 744 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 STX1BP61266 288 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 RAE1P78406 368 aaKnown RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 IGLV3-21P80748 117 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 LRRC74AQ0VAA2 488 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 GSTA3Q16772 222 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 MEP1AQ16819 746 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 DPY19L1Q2PZI1 675 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 LSM12Q3MHD2 195 aaKnown RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 ATP1A1-AS1Q5TC04 95 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 FAM69BQ5VUD6 431 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 IL23RQ5VWK5 629 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 HLA-DQA1Q5Y7H0 255 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 FAM71E1Q6IPT2 247 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 OGFOD2Q6N063 350 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 BHLHB9Q6PI77 547 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 ISLR2Q6UXK2 745 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 LGI4Q8N135 537 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 LRRC25Q8N386 305 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 LIX1Q8N485 282 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 ZADH2Q8N4Q0 377 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 GLB1L3Q8NCI6 653 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 OR7G1Q8NGA0 311 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 OR1N1Q8NGS0 311 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 OR8K3Q8NH51 312 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 C9orf43Q8TAL5 461 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 SUN3Q8TAQ9 357 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 TSLPQ969D9 159 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 EXOSC8Q96B26 276 aaKnown RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 ANKRD9Q96BM1 317 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 ZBED6CLQ96FA7 236 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 ZNF764Q96H86 408 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 SENP5Q96HI0 755 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 THOC3Q96J01 351 aaKnown RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 FCRL1Q96LA6 429 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 IMMP1LQ96LU5 166 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 RILPQ96NA2 401 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 TSSK3Q96PN8 268 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 DPY30Q9C005 99 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 OR8D2Q9GZM6 311 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 C20orf27Q9GZN8 174 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 RABEP2Q9H5N1 569 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 TEX10Q9NXF1 929 aaPredicted RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 STMN3Q9NZ72 180 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 PRODH2Q9UF12 536 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 PPIEQ9UNP9 301 aaKnown RBP7.73□□□□□ -1.17
SF3A1-208ENST00000485618 FER1L5A0AVI2 2057 aa7.73□□□□□ -1.17
SF3A1-208ENST00000485618 CNTRLQ7Z7A1 2325 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 PRRC2CQ9Y520 2896 aaKnown RBP7.72□□□□□ -1.17
SF3A1-208ENST00000485618 OR2W5A6NFC9 320 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 A8MUA0 341 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 CAPN14A8MX76 684 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 UBDO15205 165 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 SUV39H1O43463 412 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 DPM1O60762 260 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 TBX19O60806 448 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 EDF1O60869 148 aaKnown RBP7.72□□□□□ -1.17
SF3A1-208ENST00000485618 CEACAM4O75871 244 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 ATP1B1P05026 303 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 SDC1P18827 310 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 ARRB2P32121 409 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 GPC1P35052 558 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 FEN1P39748 380 aaKnown RBP7.72□□□□□ -1.17
SF3A1-208ENST00000485618 MANFP55145 182 aaKnown RBP7.72□□□□□ -1.17
SF3A1-208ENST00000485618 CLDN8P56748 225 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 SNRPNP63162 240 aaKnown RBP7.72□□□□□ -1.17
SF3A1-208ENST00000485618 TLE1Q04724 770 aa7.72□□□□□ -1.17
SF3A1-208ENST00000485618 MAP4K2Q12851 820 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms