RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 KLF5Q13887 457 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-211ENST00000484581 EFTUD2Q15029 972 aaKnown RBP eCLIP3.93□□□□□ -1.78
VPS13A-211ENST00000484581 TAB1Q15750 504 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 CLPPQ16740 277 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-211ENST00000484581 IZUMO4Q1ZYL8 232 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 KRTAP27-1Q3LI81 207 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 KIAA1644Q3SXP7 199 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 POM121L1PQ3SYA9 428 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 GTDC1Q4AE62 458 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 RFTN2Q52LD8 501 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-211ENST00000484581 ZNF311Q5JNZ3 666 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 NCR3LG1Q68D85 454 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 CBLN3Q6UW01 205 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 C9orf139Q6ZV77 190 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 SLC22A15Q8IZD6 547 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 STPG4Q8N801 248 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 ZNF397Q8NF99 534 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-211ENST00000484581 TRIM58Q8NG06 486 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 OR5AP2Q8NGF4 316 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 OR5T2Q8NGG2 359 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 TCP11Q8WWU5 503 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 COG3Q96JB2 828 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 C2orf48Q96LS8 159 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 TTC25Q96NG3 672 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 INPP4AQ96PE3 977 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-211ENST00000484581 VPS35Q96QK1 796 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 PAPOLGQ9BWT3 736 aaKnown RBP3.93□□□□□ -1.78
VPS13A-211ENST00000484581 RBM24Q9BX46 236 aaKnown RBP3.93□□□□□ -1.78
VPS13A-211ENST00000484581 RAB11FIP5Q9BXF6 653 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 ATP13A3Q9H7F0 1226 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 ATP6V1HQ9UI12 483 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 B9D1Q9UPM9 204 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 ZNF175Q9Y473 711 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 ASB3Q9Y575 518 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 ANGPTL3Q9Y5C1 460 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 PCDHGB1Q9Y5G3 927 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 NEDD4P46934 1319 aa3.93□□□□□ -1.78
VPS13A-211ENST00000484581 C15orf38-AP3S2A0A0A6YYH1 394 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 MSGN1A6NI15 193 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 K7EQM0 130 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 SH2D1BO14796 132 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 SIGLEC5O15389 551 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 CDC123O75794 336 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-211ENST00000484581 ANXA9O76027 345 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 STK17BO94768 372 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 HPRP00739 348 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 FCER2P06734 321 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 LYNP07948 512 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 PLA2G2AP14555 144 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 CYP11B1P15538 503 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 RPA2P15927 270 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 MT3P25713 68 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 PPP2R1AP30153 589 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 TRIM23P36406 574 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 SOX3P41225 446 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 SULT1E1P49888 294 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 NDST1P52848 882 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 HERVK_113P63132 956 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 ERVK-8P63133 956 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 CSNK2BP67870 215 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 DCAF4L1Q3SXM0 396 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 CCDC152Q4G0S7 254 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 SPSB3Q6PJ21 355 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 DPY19L2P2Q6ZN68 376 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 SH2D5Q6ZV89 423 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 USP43Q70EL4 1123 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 LPCAT2Q7L5N7 544 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 FAM131BQ86XD5 332 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 CIARTQ8N365 385 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-211ENST00000484581 ZCCHC7Q8N3Z6 543 aaKnown RBP3.92□□□□□ -1.78
VPS13A-211ENST00000484581 RFLNBQ8N5W9 214 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 WDR36Q8NI36 951 aaKnown RBP3.92□□□□□ -1.78
VPS13A-211ENST00000484581 NUDCD2Q8WVJ2 157 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 RLN3Q8WXF3 142 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 MRPL24Q96A35 216 aaKnown RBP3.92□□□□□ -1.78
VPS13A-211ENST00000484581 SLC25A36Q96CQ1 311 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 C4orf36Q96KX1 117 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 ZNF607Q96SK3 696 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 KRT12Q99456 494 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 MEIS3Q99687 375 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 TCHPQ9BT92 498 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 ALG12Q9BV10 488 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 ERVK-6Q9BXR3 956 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 NLNQ9BYT8 704 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 PUS3Q9BZE2 481 aaKnown RBP3.92□□□□□ -1.78
VPS13A-211ENST00000484581 CXXC4Q9H2H0 198 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 UBE2TQ9NPD8 197 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-211ENST00000484581 ZFP57Q9NU63 452 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 RDH8Q9NYR8 311 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 PLCL2Q9UPR0 1127 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 KLHDC2Q9Y2U9 406 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 KIF7Q2M1P5 1343 aa3.92□□□□□ -1.78
VPS13A-211ENST00000484581 A0A0G2JLW4 131 aa3.91□□□□□ -1.78
VPS13A-211ENST00000484581 A8MUI8 341 aa3.91□□□□□ -1.78
VPS13A-211ENST00000484581 AP3B1O00203 1094 aa3.91□□□□□ -1.78
VPS13A-211ENST00000484581 SURF4O15260 269 aa3.91□□□□□ -1.78
VPS13A-211ENST00000484581 GPRIN2O60269 458 aa3.91□□□□□ -1.78
VPS13A-211ENST00000484581 KHDRBS3O75525 346 aaKnown RBP3.91□□□□□ -1.78
VPS13A-211ENST00000484581 TRMUO75648 421 aaKnown RBP3.91□□□□□ -1.78
VPS13A-211ENST00000484581 AP2A2O94973 939 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms