RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 C19orf60Q96EN9 201 aa9.02□□□□□ -0.97
HDAC3-208ENST00000476739 CNRIP1Q96F85 164 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-208ENST00000476739 VMP1Q96GC9 406 aa9.02□□□□□ -0.97
HDAC3-208ENST00000476739 RBM18Q96H35 190 aaKnown RBP9.02□□□□□ -0.97
HDAC3-208ENST00000476739 SENP5Q96HI0 755 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-208ENST00000476739 EGLN2Q96KS0 407 aa9.02□□□□□ -0.97
HDAC3-208ENST00000476739 ZNF354BQ96LW1 612 aa9.02□□□□□ -0.97
HDAC3-208ENST00000476739 SIGLEC12Q96PQ1 595 aa9.02□□□□□ -0.97
HDAC3-208ENST00000476739 SH3GL2Q99962 352 aa9.02□□□□□ -0.97
HDAC3-208ENST00000476739 DEFB126Q9BYW3 111 aa9.02□□□□□ -0.97
HDAC3-208ENST00000476739 STMN4Q9H169 189 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-208ENST00000476739 LRTM1Q9HBL6 345 aa9.02□□□□□ -0.97
HDAC3-208ENST00000476739 EXO1Q9UQ84 846 aaKnown RBP9.02□□□□□ -0.97
HDAC3-208ENST00000476739 ERVK-19Q9WJR5 959 aa9.02□□□□□ -0.97
HDAC3-208ENST00000476739 KALRNO60229 2985 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ATP6AP2A0A1C7CYW4 349 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 TTLL8A6PVC2 850 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 GABRR3A8MPY1 467 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 TMEM114B3SHH9 223 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 NPIPB8E9PQR5 432 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SLC28A1O00337 649 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 RGS14O43566 566 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 OR10H2O60403 315 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ERAL1O75616 437 aaKnown RBP9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ATP6AP2O75787 350 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 IGKV3-11P04433 115 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ANXA4P09525 319 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SLC35E2P0CK97 266 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 CPMP14384 443 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SSTR4P31391 388 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 CD96P40200 585 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SLC1A6P48664 564 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SLC18A1P54219 525 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 RNF4P78317 190 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 PLIN5Q00G26 463 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ZNF763Q0D2J5 394 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 BST1Q10588 318 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 STX3Q13277 289 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 TUBA3CQ13748 450 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ZNF267Q14586 743 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ZNF169Q14929 603 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-208ENST00000476739 NR6A1Q15406 480 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 GALNTL6Q49A17 601 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 XKR7Q5GH72 579 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 HHATQ5VTY9 493 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SPINK14Q6IE38 97 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 FAM71E1Q6IPT2 247 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 NOXRED1Q6NXP6 359 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 TUBA3EQ6PEY2 450 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 C9orf40Q8IXQ3 194 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ARMC10Q8N2F6 343 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SLC5A8Q8N695 610 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 MORN4Q8NDC4 146 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SIMC1Q8NDZ2 872 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 CDC26Q8NHZ8 85 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 RIT1Q92963 219 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 EXOSC8Q96B26 276 aaKnown RBP9.01□□□□□ -0.97
HDAC3-208ENST00000476739 KLHL29Q96CT2 875 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 FCRL1Q96LA6 429 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ATP6V1G3Q96LB4 118 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 PPP1R36Q96LQ0 422 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ZNF681Q96N22 645 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 CNPPD1Q9BV87 410 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 HES7Q9BYE0 225 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ILKAPQ9H0C8 392 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ACBD3Q9H3P7 528 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SLAMF7Q9NQ25 335 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 ZNF446Q9NWS9 450 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 C1orf109Q9NX04 203 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 BAIAP2L1Q9UHR4 511 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 UTS2RQ9UKP6 389 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 NTNG1Q9Y2I2 539 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 RRP15Q9Y3B9 282 aaKnown RBP9.01□□□□□ -0.97
HDAC3-208ENST00000476739 PCDHGA10Q9Y5H3 936 aa9.01□□□□□ -0.97
HDAC3-208ENST00000476739 SHANK1Q9Y566 2161 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 CFAP46Q8IYW2 2715 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 DYTNA2CJ06 578 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 OR5H15A6NDH6 313 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 WWP2O00308 870 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 GUCY1B2O75343 617 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 ITGA10O75578 1167 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 OR2J2O76002 312 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 NEURL1O76050 574 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 CHEK2O96017 543 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 NEFHP12036 1026 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 COX7A2P14406 83 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 PORP16435 677 aaPredicted RBP9□□□□□ -0.97
HDAC3-208ENST00000476739 SDC1P18827 310 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 NT5EP21589 574 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 HK2P52789 917 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 RPL38P63173 70 aaKnown RBP9□□□□□ -0.97
HDAC3-208ENST00000476739 C2orf80Q0P641 193 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 MGAT2Q10469 447 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 DUSP8Q13202 625 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 BIKQ13323 160 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 TLR1Q15399 786 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 LTB4RQ15722 352 aa9□□□□□ -0.97
HDAC3-208ENST00000476739 INPP5JQ15735 1006 aaPredicted RBP9□□□□□ -0.97
HDAC3-208ENST00000476739 PDCD2Q16342 344 aaPredicted RBP9□□□□□ -0.97
HDAC3-208ENST00000476739 SPRED3Q2MJR0 410 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms