RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CD163Q86VB7 1156 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 NUDT13Q86X67 352 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 GOLM1Q8NBJ4 401 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 OR5L2Q8NGL0 311 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 SERPINI1Q99574 410 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 VKORC1Q9BQB6 163 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 CENPKQ9BS16 269 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 DEFB127Q9H1M4 99 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 PRM3Q9NNZ6 103 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 COPS7AQ9UBW8 275 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 TMCO1Q9UM00 188 aa13.02□□□□□ -0.32
UPF3A-204ENST00000475218 SMIM24O75264 130 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 CELA3AP09093 270 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 CT62P0C5K7 136 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 ESRRAP11474 423 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-204ENST00000475218 COX7A2P14406 83 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 CNR1P21554 472 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 DNASE1L1P49184 302 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 PPIAP62937 165 aaKnown RBP13.02□□□□□ -0.33
UPF3A-204ENST00000475218 PHEXP78562 749 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 TBL3Q12788 808 aaKnown RBP13.02□□□□□ -0.33
UPF3A-204ENST00000475218 EBPQ15125 230 aaKnown RBP13.02□□□□□ -0.33
UPF3A-204ENST00000475218 TCHHL1Q5QJ38 904 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-204ENST00000475218 OPN5Q6U736 354 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 CYP20A1Q6UW02 462 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 TAOK1Q7L7X3 1001 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 METTL4Q8N3J2 472 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 TMEM251Q8N6I4 163 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 ZNF441Q8N8Z8 693 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 MZB1Q8WU39 189 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 PHF10Q8WUB8 498 aaKnown RBP13.02□□□□□ -0.33
UPF3A-204ENST00000475218 RBM18Q96H35 190 aaKnown RBP13.02□□□□□ -0.33
UPF3A-204ENST00000475218 CNPPD1Q9BV87 410 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 TUBA8Q9NY65 449 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-204ENST00000475218 IKBKGQ9Y6K9 419 aa13.02□□□□□ -0.33
UPF3A-204ENST00000475218 AKAP9Q99996 3911 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 CREBBPQ92793 2442 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 EXOC1LA0A1B0GW35 172 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 DLX3O60479 287 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 PDYNP01213 254 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 KLK1P06870 262 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 SLC35E2P0CK97 266 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 TLX1P31314 330 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-204ENST00000475218 SSTR4P31391 388 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 HSD17B3P37058 310 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 PIGAP37287 484 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 KIR3DL1P43629 444 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 BIKQ13323 160 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 ZNF267Q14586 743 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-204ENST00000475218 HYAL4Q2M3T9 481 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 UNC50Q53HI1 259 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 SGO1Q5FBB7 561 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 COMMD6Q7Z4G1 85 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 MILR1Q7Z6M3 343 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 RIT1Q92963 219 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 ATP6V1E2Q96A05 226 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 SGCZQ96LD1 299 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 TMEM237Q96Q45 408 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 HBEGFQ99075 208 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 FAM173AQ9BQD7 235 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 WWTR1Q9GZV5 400 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 CXorf21Q9HAI6 301 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 CES1P1Q9UKY3 287 aa13.01□□□□□ -0.33
UPF3A-204ENST00000475218 EXPH5Q8NEV8 1989 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 FOXO6A8MYZ6 492 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 PRRG2O14669 202 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 IGHG3P01860 377 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 FBXO45P0C2W1 286 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 S1PR1P21453 382 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 GALNSP34059 522 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 ARL1P40616 181 aaPredicted RBP13□□□□□ -0.33
UPF3A-204ENST00000475218 MAGEA5P43359 124 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 DUSP2Q05923 314 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 NDUFAF5Q5TEU4 345 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 OR52E8Q6IFG1 317 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 TRMT10CQ7L0Y3 403 aaKnown RBP13□□□□□ -0.33
UPF3A-204ENST00000475218 MCEMP1Q8IX19 187 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 GSPT2Q8IYD1 628 aaKnown RBP13□□□□□ -0.33
UPF3A-204ENST00000475218 ZNF295-AS1Q8N0V1 137 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 ZNF615Q8N8J6 731 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 ACBD4Q8NC06 268 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 OR10G3Q8NGC4 313 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 PAQR8Q8TEZ7 354 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 SPACA9Q96E40 222 aaPredicted RBP13□□□□□ -0.33
UPF3A-204ENST00000475218 TRIM8Q9BZR9 551 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 SACM1LQ9NTJ5 587 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 CHCHD2Q9Y6H1 151 aaPredicted RBP13□□□□□ -0.33
UPF3A-204ENST00000475218 CELSR1Q9NYQ6 3014 aa13□□□□□ -0.33
UPF3A-204ENST00000475218 LRRC3CA6NJW4 275 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 OR10H2O60403 315 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 OR4F21O95013 312 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 CLDN14O95500 239 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 TPOP07202 933 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 RFPL3SP0C7P2 107 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 CHN1P15882 459 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 SMSP52788 366 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 MGAT2Q10469 447 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 DUSP8Q13202 625 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 ZNF678Q5SXM1 525 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 ARHGAP11AQ6P4F7 1023 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms