RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 LRRC14BA6NHZ5 514 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 TMPRSS11DO60235 418 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 HCN1O60741 890 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 EEDO75530 441 aaKnown RBP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 KLHL2O95198 593 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 GPR75O95800 540 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 ARL1P40616 181 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 SERPINB8P50452 374 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 GUCY2DQ02846 1103 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 CKAP4Q07065 602 aaKnown RBP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 CUL3Q13618 768 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 PCBP2Q15366 365 aaKnown RBP eCLIP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 MRM1Q6IN84 353 aaKnown RBP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 LYPD8Q6UX82 237 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 NUDT13Q86X67 352 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 DMRTC2Q8IXT2 367 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 RIT1Q92963 219 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 ZNF717Q9BY31 904 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 WWTR1Q9GZV5 400 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 DDX31Q9H8H2 851 aaKnown RBP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 RYDENQ9NUL5 291 aaKnown RBP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 FAM215AQ9Y5M1 114 aa18.21■□□□□ 0.51
COL9A3-210ENST00000472880 TEP1Q99973 2627 aaKnown RBP18.21■□□□□ 0.51
COL9A3-210ENST00000472880 ESYT3A0FGR9 886 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 GLOD5A6NK44 160 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 OR6C76A6NM76 312 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 KLK8O60259 260 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 URI1O94763 535 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-210ENST00000472880 AIFM1O95831 613 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 FBXO45P0C2W1 286 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 FAM58BPP0C7Q3 252 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 GLI4P10075 376 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 SERPINB3P29508 390 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 TYK2P29597 1187 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 PHBP35232 272 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 BSGP35613 385 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 ZFP36L2P47974 494 aaKnown RBP18.2■□□□□ 0.5
COL9A3-210ENST00000472880 EBPQ15125 230 aaKnown RBP18.2■□□□□ 0.5
COL9A3-210ENST00000472880 C1orf185Q5T7R7 199 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 OR52E8Q6IFG1 317 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 ADGRD1Q6QNK2 874 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 CLYBLQ8N0X4 340 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 OR10G3Q8NGC4 313 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 JSRP1Q96MG2 331 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-210ENST00000472880 ZNF559Q9BR84 538 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 SLC24A3Q9HC58 644 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 ZFP64Q9NPA5 681 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 CNIH4Q9P003 139 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 B4GALT7Q9UBV7 327 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 RNF11Q9Y3C5 154 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 ASB4Q9Y574 426 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 TACC2O95359 2948 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 POLQO75417 2590 aa18.2■□□□□ 0.5
COL9A3-210ENST00000472880 DNAJC13O75165 2243 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 A0A1W2PR48 441 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 HMX2A2RU54 273 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 FAM47E-STBD1D6RA91 191 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 SIX3O95343 332 aaPredicted RBP18.19■□□□□ 0.5
COL9A3-210ENST00000472880 HOXD4P09016 255 aaPredicted RBP18.19■□□□□ 0.5
COL9A3-210ENST00000472880 GABRA1P14867 456 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 SLC37A1P57057 533 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 MYBPHQ13203 477 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 RTL6Q6ICC9 239 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 C8orf74Q6P047 294 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 METTL2BQ6P1Q9 378 aaKnown RBP18.19■□□□□ 0.5
COL9A3-210ENST00000472880 TMEM200AQ86VY9 491 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 TAGAPQ8N103 731 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 LIX1Q8N485 282 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 L3MBTL4Q8NA19 623 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 WDR20Q8TBZ3 569 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 ATP6V1E2Q96A05 226 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 SERPINI1Q99574 410 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 DOHHQ9BU89 302 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 VPS11Q9H270 941 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 ALKBH4Q9NXW9 302 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 SPRR3Q9UBC9 169 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 KCNN3Q9UGI6 736 aa18.19■□□□□ 0.5
COL9A3-210ENST00000472880 CHCHD2Q9Y6H1 151 aaPredicted RBP18.19■□□□□ 0.5
COL9A3-210ENST00000472880 A0A0G2JNJ9 132 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 LRRC3CA6NJW4 275 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 FOXE1O00358 373 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-210ENST00000472880 LRATO95237 230 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 CLDN9O95484 217 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 ALDOAP04075 364 aaKnown RBP18.18■□□□□ 0.5
COL9A3-210ENST00000472880 SLC35E2P0CK97 266 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 ENDOUP21128 410 aaKnown RBP18.18■□□□□ 0.5
COL9A3-210ENST00000472880 GALNSP34059 522 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 NEK2P51955 445 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 SLC7A5Q01650 507 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 TECRLQ5HYJ1 363 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 C6orf163Q5TEZ5 329 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 LRRC25Q8N386 305 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-210ENST00000472880 MYRIPQ8NFW9 859 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 ZNF597Q96LX8 424 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 QPCTLQ9NXS2 382 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 PSD3Q9NYI0 1048 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 Q9UFV3 132 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 F8P00451 2351 aa18.18■□□□□ 0.5
COL9A3-210ENST00000472880 ANKRD17O75179 2603 aaKnown RBP18.18■□□□□ 0.5
COL9A3-210ENST00000472880 CCDC168Q8NDH2 2452 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms