RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PCED1BQ96HM7 432 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 SNX18Q96RF0 628 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 ZNF559Q9BR84 538 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 LOC285095A0A1B0GVY8 99 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 NDUFS4O43181 175 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 ZNF84P51523 738 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 PRPS1P60891 318 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 FGFBP1Q14512 234 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 ZNF678Q5SXM1 525 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 DCAF12L1Q5VU92 463 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 SLC8B1Q6J4K2 584 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 TRIM46Q7Z4K8 759 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 C1orf127Q8N9H9 656 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 FAM46BQ96A09 425 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 MSRAQ9UJ68 235 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 A0A1W2PQL4 384 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 NPIPA7E9PJI5 369 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 NPIPA8P0DM63 369 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 PTBP1P26599 531 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RPS3AP61247 264 aaKnown RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 PPIGQ13427 754 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 IDO2Q6ZQW0 420 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 PHTF2Q8N3S3 785 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 C12orf45Q8N5I9 185 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 MYLIPQ8WY64 445 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RRNAD1Q96FB5 475 aaKnown RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 CCDC120Q96HB5 630 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 LMLNQ96KR4 655 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 MCCC2Q9HCC0 563 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 TIAM2Q8IVF5 1701 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RGPD5Q99666 1765 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 MMP3P08254 477 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 GKP32189 559 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 ECI1P42126 302 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 AFF3P51826 1226 aaKnown RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RIDAP52758 137 aaKnown RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 SLC25A11Q02978 314 aaKnown RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 GPR68Q15743 365 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF808Q8N4W9 903 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 OR5H2Q8NGV7 314 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 DPYSL5Q9BPU6 564 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 OR51J1Q9H342 316 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 MAST2Q6P0Q8 1798 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 HAS3O00219 553 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 HBE1P02100 147 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RAB40ALP0C0E4 278 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 G6PDP11413 515 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 HK3P52790 923 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 SLC18B1Q6NT16 456 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 PAPD5Q8NDF8 572 aaKnown RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RAB40AQ8WXH6 277 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 FOXRED1Q96CU9 486 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 LRIG1Q96JA1 1093 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 DPCDQ9BVM2 203 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RGPD2P0DJD1 1756 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RIMBP3CA6NJZ7 1639 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RIMBP3BA6NNM3 1639 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 RIMBP3Q9UFD9 1639 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 SMIM28A0A1B0GU29 152 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 A6NHS1 94 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 NUDT1P36639 197 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 UGT8Q16880 541 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 MYLK3Q32MK0 819 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 ADGRF1Q5T601 910 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 TMEM198Q66K66 360 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 GOLGA7Q7Z5G4 137 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 POGLUT1Q8NBL1 392 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 PDZD7Q9H5P4 517 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 TDP1Q9NUW8 608 aa12.77□□□□□ -0.37
COL6A3-209ENST00000472056 J3QR89 54 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 CFAP52Q8N1V2 620 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 OR8K3Q8NH51 312 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 HOXD1Q9GZZ0 328 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 ABCG8Q9H221 673 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 PLEKHA3Q9HB20 300 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 UBFD1O14562 309 aaKnown RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 MITFO75030 526 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 TMEM63AO94886 807 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 ELK4P28324 431 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 LEPRP48357 1165 aaKnown RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 MZT1Q08AG7 82 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 PGM2L1Q6PCE3 622 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 SAMD7Q7Z3H4 446 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 TP63Q9H3D4 680 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-209ENST00000472056 DNAJC5Q9H3Z4 198 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 FKBPLQ9UIM3 349 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 MUSKO15146 869 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 FXYD6P3P58550 94 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 UFM1P61960 85 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 BCL2L15Q5TBC7 163 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 MANEALQ5VSG8 457 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 RNF130Q86XS8 419 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 SGPP2Q8IWX5 399 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 KLHDC8BQ8IXV7 354 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 DNAAF1Q8NEP3 725 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 ABHD11Q8NFV4 315 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 TAAR8Q969N4 342 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 LRCH3Q96II8 777 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 ACTRT3Q9BYD9 372 aa12.76□□□□□ -0.37
COL6A3-209ENST00000472056 SLC19A3Q9BZV2 496 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms