RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ZNF485	Q8NCK3	441 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	CSNK1G2-AS1	Q8NCQ2	148 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	ZNRF1	Q8ND25	227 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	CHDH	Q8NE62	594 aa	Predicted RBP	3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	OR52E1	Q8NGJ3	308 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	OR4F5	Q8NH21	305 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	HIST1H2AC	Q93077	130 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	ZNF597	Q96LX8	424 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	TRIM6	Q9C030	488 aa	Predicted RBP	3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	EGLN1	Q9GZT9	426 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	DDX47	Q9H0S4	455 aa	Known RBP	3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	NT5DC2	Q9H857	520 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	GNB4	Q9HAV0	340 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	SYTL2	Q9HCH5	934 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	HOMER3	Q9NSC5	361 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	TUBGCP4	Q9UGJ1	667 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	FAM153A	Q9UHL3	310 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	CCPG1	Q9ULG6	757 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	ATG4B	Q9Y4P1	393 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	AUP1	Q9Y679	476 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	SALL1	Q9NSC2	1324 aa		3.09	□□□□□ -1.91
PTCD3-209	ENST00000472044	PI15	O43692	258 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	SEC22B	O75396	215 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	REC8	O95072	547 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	IGHV3-13	P01766	116 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ALPP	P05187	535 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	CCDC159	P0C7I6	412 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ALPPL2	P10696	532 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	MBL2	P11226	248 aa	Predicted RBP	3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	IL10	P22301	178 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ID1	P41134	155 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	SLC1A4	P43007	532 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ACADSB	P45954	432 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	CCL11	P51671	97 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	TKTL1	P51854	596 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	PEX3	P56589	373 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	CD300C	Q08708	224 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	WASHC5	Q12768	1159 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	KLF5	Q13887	457 aa	Predicted RBP	3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	CCL14	Q16627	93 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	HAGH	Q16775	308 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	SHROOM1	Q2M3G4	852 aa	Predicted RBP	3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	C9orf66	Q5T8R8	295 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	WDR25	Q64LD2	544 aa	Predicted RBP	3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	OLFM4	Q6UX06	510 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF619	Q8N2I2	560 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	CHCHD4	Q8N4Q1	142 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	MRPL43	Q8N983	215 aa	Known RBP	3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	LEMD2	Q8NC56	503 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	CCNY	Q8ND76	341 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ICA1L	Q8NDH6	482 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	NEK11	Q8NG66	645 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	OR1K1	Q8NGR3	316 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	RDH11	Q8TC12	318 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	FBXO25	Q8TCJ0	367 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	C16orf58	Q96GQ5	468 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	TMEM237	Q96Q45	408 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ATOH8	Q96SQ7	321 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	HSD17B14	Q9BPX1	270 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	FTHL17	Q9BXU8	183 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ABCG4	Q9H172	646 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ABCG8	Q9H221	673 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	TNMD	Q9H2S6	317 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	HEXA-AS1	Q9H8Q6	139 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	JPT2	Q9H910	190 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	SP140L	Q9H930	580 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	ERVK-18	Q9QC07	812 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	KIF7	Q2M1P5	1343 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	FAM205A	Q6ZU69	1335 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	COL5A2	P05997	1499 aa	Predicted RBP	3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044	GON4L	Q3T8J9	2241 aa		3.08	□□□□□ -1.92
PTCD3-209	ENST00000472044		A0A0A6YYD4	124 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	IGHV3-16	A0A0C4DH30	117 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	RNF212B	A8MTL3	300 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	HCK	P08631	526 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF10	P21506	573 aa	Predicted RBP	3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	SHC1	P29353	583 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	MARCKS	P29966	332 aa	Predicted RBP	3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	MAT2A	P31153	395 aa	Known RBP	3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	NUMB	P49757	651 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	PGF	P49763	221 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	GSK3B	P49841	420 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF131	P52739	623 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	MS4A2	Q01362	244 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	ACY1	Q03154	408 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	FCHO2	Q0JRZ9	810 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	ENPP2	Q13822	863 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	PDK1	Q15118	436 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	PKN2	Q16513	984 aa	Known RBP	3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	LPAL2	Q16609	132 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	AGAP7P	Q5VUJ5	663 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	LIPJ	Q5W064	366 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	TMUB2	Q71RG4	321 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	ASRGL1	Q7L266	308 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	TAF8	Q7Z7C8	310 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	YRDC	Q86U90	279 aa	Known RBP	3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	GTSCR1	Q86UQ5	136 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	CCDC71	Q8IV32	467 aa	Predicted RBP	3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	LINC00518	Q8N0U6	118 aa		3.07	□□□□□ -1.92
PTCD3-209	ENST00000472044	BEST4	Q8NFU0	473 aa		3.07	□□□□□ -1.92

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