RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 NEK2P51955 445 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 HERVK_113P63132 956 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 ERVK-8P63133 956 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 ADGRD1Q6QNK2 874 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 RNF111Q6ZNA4 994 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 ACAD11Q709F0 780 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 SLC29A4Q7RTT9 530 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 NUDT13Q86X67 352 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 DND1Q8IYX4 353 aaKnown RBP15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 PTGR2Q8N8N7 351 aaPredicted RBP15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 PAQR8Q8TEZ7 354 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 CHTF18Q8WVB6 975 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 SLC44A1Q8WWI5 657 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 ISL2Q96A47 359 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 SPACA9Q96E40 222 aaPredicted RBP15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 SERPINI1Q99574 410 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 ERVK-6Q9BXR3 956 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 NOL11Q9H8H0 719 aaKnown RBP15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 SEMA4BQ9NPR2 832 aaPredicted RBP15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 PNPLA3Q9NST1 481 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 TMCO1Q9UM00 188 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 ERVK-19Q9WJR5 959 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 TACC2O95359 2948 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 HCFC1P51610 2035 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 GLOD5A6NK44 160 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 OR6C76A6NM76 312 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 FIGNL2A6NMB9 653 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 WASHC1A8K0Z3 465 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 STX16-NPEPL1H3BU86 382 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 AQP7O14520 342 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 OR7A17O14581 309 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 STX16O14662 325 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 SUSD5O60279 629 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 AIFM1O95831 613 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 INHBAP08476 426 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 RBP1P09455 135 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 ACVR2AP27037 513 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 CCNG1P51959 295 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 SLC37A1P57057 533 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 NUP107P57740 925 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 PMPCAQ10713 525 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 ZNF267Q14586 743 aaPredicted RBP15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 SLC10A1Q14973 349 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 WHAMMP3Q1A5X7 153 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 FBXW8Q8N3Y1 598 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 OR52B6Q8NGF0 335 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 OR5M9Q8NGP3 310 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 OR5M3Q8NGP4 307 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 DOK4Q8TEW6 326 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 RIT1Q92963 219 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 ATP6V1E2Q96A05 226 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 GAL3ST4Q96RP7 486 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 NTMT1Q9BV86 223 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 WWTR1Q9GZV5 400 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 TSPYL1Q9H0U9 437 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 CDC42EP4Q9H3Q1 356 aaKnown RBP15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 ZNF358Q9NW07 568 aa15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.28■□□□□ 0.04
CCDC28B-204ENST00000469003 ATP6AP2A0A1C7CYW4 349 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 FAM90A27PA6NNH2 459 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 ATP6AP2O75787 350 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 URI1O94763 535 aaPredicted RBP15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 CELA3AP09093 270 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 FBXO45P0C2W1 286 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 SLC35E2P0CK97 266 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 IGFBP2P18065 325 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 SERPINB3P29508 390 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 ARL1P40616 181 aaPredicted RBP15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 MAN2A2P49641 1150 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 SERPINB9P50453 376 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 TFF3Q07654 80 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 EBPQ15125 230 aaKnown RBP15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 C10orf62Q5T681 223 aaPredicted RBP15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 OR52E8Q6IFG1 317 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 TAOK1Q7L7X3 1001 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 CCDC71Q8IV32 467 aaPredicted RBP15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 SARAFQ96BY9 339 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 PHF21BQ96EK2 531 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 CDK15Q96Q40 435 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 LDAHQ9H6V9 325 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 KCNJ16Q9NPI9 418 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 CNIH4Q9P003 139 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 XPR1Q9UBH6 696 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 PCTPQ9UKL6 214 aa15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 BOKQ9UMX3 212 aaPredicted RBP15.27■□□□□ 0.04
CCDC28B-204ENST00000469003 DCHS2Q6V1P9 2916 aa15.27■□□□□ 0.03
CCDC28B-204ENST00000469003 NKX2-6A6NCS4 301 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 HCN1O60741 890 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 SMIM24O75264 130 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 TOXO94900 526 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 ACSL3O95573 720 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 GBAP04062 536 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 CLPSP04118 112 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 COL6A2P12110 1019 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 CAPN3P20807 821 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 KCNJ2P63252 427 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 TLE4Q04727 773 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 TRAF3Q13114 568 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 TSNAXIP1Q2TAA8 658 aa15.26■□□□□ 0.03
CCDC28B-204ENST00000469003 PRAMEF20Q5VT98 475 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms