RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 PRKACBP22694 351 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 UQCRC2P22695 453 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 UQCRC1P31930 480 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 DGKGP49619 791 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 EVX1P49640 407 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 CASP9P55211 416 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 RPS13P62277 151 aaKnown RBP6.93□□□□□ -1.3
USP48-206ENST00000464577 SNRPD2P62316 118 aaKnown RBP6.93□□□□□ -1.3
USP48-206ENST00000464577 RAB40BQ12829 278 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 COX10Q12887 443 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 ELAVL2Q12926 359 aaKnown RBP6.93□□□□□ -1.3
USP48-206ENST00000464577 NAE1Q13564 534 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 CDH18Q13634 790 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 MPEG1Q2M385 716 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 FAM214AQ32MH5 1076 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 CRTC2Q53ET0 693 aaPredicted RBP6.93□□□□□ -1.3
USP48-206ENST00000464577 MED27Q6P2C8 311 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 MZT2AQ6P582 158 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 IKBIPQ70UQ0 350 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 HDDC2Q7Z4H3 204 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 WDR53Q7Z5U6 358 aaPredicted RBP6.93□□□□□ -1.3
USP48-206ENST00000464577 AMIGO1Q86WK6 493 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 LINC00471Q8N535 108 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 LSMEM1Q8N8F7 131 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 NLGN2Q8NFZ4 835 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 C16orf78Q8WTQ4 265 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 ASZ1Q8WWH4 475 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 SOCS4Q8WXH5 440 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 ECHDC3Q96DC8 303 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 WDR34Q96EX3 536 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 ASIC4Q96FT7 647 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 ZNF582Q96NG8 517 aaPredicted RBP6.93□□□□□ -1.3
USP48-206ENST00000464577 OR4K3Q96R72 315 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 PKP4Q99569 1192 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 ATF6BQ99941 703 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 FAM83CQ9BQN1 747 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 HDHD5Q9BXW7 423 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 PIGUQ9H490 435 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 TMEM39AQ9NV64 488 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 MARCH5Q9NX47 278 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 NLKQ9UBE8 527 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 SLC23A1Q9UHI7 598 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 ICKQ9UPZ9 632 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 SPEF1Q9Y4P9 236 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 CDH10Q9Y6N8 788 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 SRCAPQ6ZRS2 3230 aa6.93□□□□□ -1.3
USP48-206ENST00000464577 TRAV19A0A0A6YYK7 116 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 CXorf51AA0A1B0GTR3 108 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 A0A1W2PRB8 838 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 SNTNA6NMZ2 147 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 PDPK1O15530 556 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 PRKYO43930 277 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 SLC22A5O76082 557 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 IGFBP1P08833 259 aaPredicted RBP6.92□□□□□ -1.3
USP48-206ENST00000464577 ACP2P11117 423 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 HMGA1P17096 107 aaKnown RBP6.92□□□□□ -1.3
USP48-206ENST00000464577 LHCGRP22888 699 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 GKP32189 559 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 SOAT1P35610 550 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 MAPK9P45984 424 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 TUFMP49411 452 aaKnown RBP6.92□□□□□ -1.3
USP48-206ENST00000464577 MAPK12P53778 367 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 PER3P56645 1201 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 EFNB1P98172 346 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 SEMG2Q02383 582 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 PTSQ03393 145 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 RTP2Q5QGT7 225 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 ADNP2Q6IQ32 1131 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 TCTN3Q6NUS6 607 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 FUT10Q6P4F1 479 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 SLCO4C1Q6ZQN7 724 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 COMMD6Q7Z4G1 85 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 SLC51BQ86UW2 128 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 GLCCI1Q86VQ1 547 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 IQCF2Q8IXL9 164 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 UBE2J2Q8N2K1 259 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 SYT14Q8NB59 555 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 SLC37A3Q8NCC5 494 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 GPR32P1Q8NGA4 272 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 WFDC5Q8TCV5 224 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 TM9SF4Q92544 642 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 TMEM203Q969S6 136 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 CIDECQ96AQ7 238 aaPredicted RBP6.92□□□□□ -1.3
USP48-206ENST00000464577 CHFRQ96EP1 664 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 C1GALT1C1Q96EU7 318 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 EMC7Q9NPA0 242 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 TVP23BQ9NYZ1 205 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 GLTPQ9NZD2 209 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 COMMD3Q9UBI1 195 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 MBD1Q9UIS9 605 aaPredicted RBP6.92□□□□□ -1.3
USP48-206ENST00000464577 PRELID1Q9Y255 219 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 YARS2Q9Y2Z4 477 aaKnown RBP6.92□□□□□ -1.3
USP48-206ENST00000464577 CLCA3PQ9Y6N3 262 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 RNF215Q9Y6U7 377 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 A8MX80 341 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 C5orf58C9J3I9 102 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 ZNF197O14709 1029 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 CASKO14936 926 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 PRODHO43272 600 aa6.92□□□□□ -1.3
USP48-206ENST00000464577 TLX2O43763 284 aaPredicted RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms