RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 PINK1Q9BXM7 581 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 TEX101Q9BY14 249 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 POLR2J2Q9GZM3 115 aaKnown RBP8.39□□□□□ -1.07
HDAC3-202ENST00000459727 FBRSQ9HAH7 460 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 TRPV4Q9HBA0 871 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 TMEM184CQ9NVA4 438 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 RLIMQ9NVW2 624 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 LYARQ9NX58 379 aaKnown RBP8.39□□□□□ -1.07
HDAC3-202ENST00000459727 KLHL28Q9NXS3 571 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 GDE1Q9NZC3 331 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 SSR3Q9UNL2 185 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 DIMT1Q9UNQ2 313 aaKnown RBP8.39□□□□□ -1.07
HDAC3-202ENST00000459727 DOLKQ9UPQ8 538 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 GRIP1Q9Y3R0 1128 aa8.39□□□□□ -1.07
HDAC3-202ENST00000459727 CFAP20Q9Y6A4 193 aaKnown RBP8.39□□□□□ -1.07
HDAC3-202ENST00000459727 NUP210Q8TEM1 1887 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 IQCMA0A1B0GVH7 501 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 TMEM221A6NGB7 291 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 DUXAA6NLW8 204 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 ANHXE9PGG2 379 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 HMGN4O00479 90 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 NRG2O14511 850 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 AQP9O43315 295 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 KIAA0513O60268 411 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 NME6O75414 186 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 KLHL18O94889 574 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 LGI1O95970 557 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 IL1AP01583 271 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 GBAP04062 536 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 HSMCR30P0CW71 290 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 NR2F6P10588 404 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 TNFRSF1BP20333 461 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 C5AR1P21730 350 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 NDUFS1P28331 727 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 PKLRP30613 574 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 P2RY2P41231 377 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 GJA8P48165 433 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 GSSP48637 474 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 PCYT1AP49585 367 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 NUDT6P53370 316 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 STXBP1P61764 594 aaKnown RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 FPGSQ05932 587 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 PRDX1Q06830 199 aaKnown RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 HSPB3Q12988 150 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 GANABQ14697 944 aaKnown RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 NDUFA5Q16718 116 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 TSTQ16762 297 aaKnown RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 DUSP7Q16829 419 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 LRRC26Q2I0M4 334 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 C3orf38Q5JPI3 329 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 TCTN3Q6NUS6 607 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 PGBD2Q6P3X8 592 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 TNFAIP8L2Q6P589 184 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 CCDC190Q86UF4 302 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 TRIM73Q86UV7 250 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 ZBTB46Q86UZ6 589 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 POC5Q8NA72 575 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 TEX47Q8TBZ9 253 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 SMG7Q92540 1137 aaKnown RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 SMARCD2Q92925 531 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 FOXJ1Q92949 421 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 RFKQ969G6 155 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 UBE2FQ969M7 185 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 KIAA1143Q96AT1 154 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 BBS4Q96RK4 519 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 TREX2Q9BQ50 279 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 RHNO1Q9BSD3 238 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 FUZQ9BT04 418 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 MED18Q9BUE0 208 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 CDADC1Q9BWV3 514 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 ZNF717Q9BY31 904 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 WDR26Q9H7D7 661 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 SFXN1Q9H9B4 322 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 SLC35C2Q9NQQ7 365 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 ABCB10Q9NRK6 738 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 SIRT3Q9NTG7 399 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 ZCCHC3Q9NUD5 404 aaKnown RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 MED17Q9NVC6 651 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 MRPS18AQ9NVS2 196 aaKnown RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 NDUFB11Q9NX14 153 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 REV1Q9UBZ9 1251 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 HCN2Q9UL51 889 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 SH2B3Q9UQQ2 575 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 EXOSC1Q9Y3B2 195 aaKnown RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 VCANP13611 3396 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 MUC22E2RYF6 1773 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-202ENST00000459727 ANKRD12Q6UB98 2062 aa8.38□□□□□ -1.07
HDAC3-202ENST00000459727 UNC80Q8N2C7 3258 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 TRBV4-1A0A0J9YWV2 114 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 HYKKA2RU49 373 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 SLC35F4A4IF30 521 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 TRIM43BA6NCK2 446 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 PRAMEF25A6NGN4 478 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 PRRT4C9JH25 899 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 ZNF670-ZNF695F2Z2N8 137 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 J3KTA2 159 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 K7ESM1 405 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 STK25O00506 426 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 SNPHO15079 494 aa8.37□□□□□ -1.07
HDAC3-202ENST00000459727 TBX1O43435 398 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms