RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SCGB2A1O75556 95 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 IFNA2P01563 188 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 IFNGP01579 166 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 TK1P04183 234 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 S100A8P05109 93 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ACO1P21399 889 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 DGKAP23743 735 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 TEAD1P28347 426 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT2B10P36537 528 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CSKP41240 450 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 FASLGP48023 281 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NDUFV1P49821 464 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 MLLT10P55197 1068 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ATP5IP56385 69 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CTXN1P60606 82 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ACTR2P61160 394 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NUTF2P61970 127 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ERVK-25P63136 954 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PRR5P85299 388 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 GABPAQ06546 454 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 GANABQ14697 944 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 HLXQ14774 488 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 GRM4Q14833 912 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF169Q14929 603 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NR1I3Q14994 352 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC9A3R2Q15599 337 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC1A5Q15758 541 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CALCRLQ16602 461 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SPANXN2Q5MJ10 180 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 GCNT6Q5T4J0 391 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 VASNQ6EMK4 673 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM81Q6P7N7 255 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SYCE2Q6PIF2 218 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CFAP77Q6ZQR2 320 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 LRRC74BQ6ZQY2 392 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 USP30Q70CQ3 517 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 TAS1R1Q7RTX1 841 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 P4HA3Q7Z4N8 544 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 YRDCQ86U90 279 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NRROSQ86YC3 692 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 LACC1Q8IV20 430 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 FOXP4Q8IVH2 680 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM71AQ8IYT1 594 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 GHDCQ8N2G8 530 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 GALNT4Q8N4A0 578 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NANOGP1Q8N7R0 232 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 FRMD1Q8N878 549 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CYB561A3Q8NBI2 242 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ZFP28Q8NHY6 868 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 MRGPRDQ8TDS7 321 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NEK7Q8TDX7 302 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM172AQ8WUF8 416 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF480Q8WV37 535 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SELENOMQ8WWX9 145 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 C3orf49Q96BT1 292 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NEIL1Q96FI4 390 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PEX11GQ96HA9 241 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NSL1Q96IY1 281 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 TXNDC15Q96J42 360 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 WDR92Q96MX6 357 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 OR5M11Q96RB7 305 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 KRT12Q99456 494 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ERVK-6Q9BXR3 956 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 MS4A7Q9GZW8 240 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NXF3Q9H4D5 531 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 DCLRE1BQ9H816 532 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ABCB9Q9NP78 766 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CTPS2Q9NRF8 586 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ABCB10Q9NRK6 738 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC17A7Q9P2U7 560 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC23A1Q9UHI7 598 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PSMD13Q9UNM6 376 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 RPL26L1Q9UNX3 145 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 RAXQ9Y2V3 346 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 KLK4Q9Y5K2 254 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ALG5Q9Y673 324 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CDK5RAP2Q96SN8 1893 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 MYH7P12883 1935 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SIPA1L1O43166 1804 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A087WWL8 130 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM230AA0A1W2PPH8 454 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 A8MUI8 341 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SURF4O15260 269 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PRPF4O43172 522 aaKnown RBP eCLIP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CYP26A1O43174 497 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SEPT4O43236 478 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 HEXAP06865 529 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF26P17031 533 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 KLRC1P26715 233 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 DCKP27707 260 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 POU1F1P28069 291 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ELK4P28324 431 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CTGFP29279 349 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PSMB10P40306 273 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NAA10P41227 235 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 KIAA1024LP59773 190 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 MRPS11P82912 194 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF200P98182 395 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SEMG2Q02383 582 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SPOCK1Q08629 439 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms