RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 C9orf40Q8IXQ3 194 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 ZCCHC7Q8N3Z6 543 aaKnown RBP12.23□□□□□ -0.45
HMGB3-204ENST00000448905 HUS1BQ8NHY5 278 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 NRGNQ92686 78 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 DIO2Q92813 273 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 EXT2Q93063 718 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 RNASE6Q93091 150 aaKnown RBP12.23□□□□□ -0.45
HMGB3-204ENST00000448905 TP53INP1Q96A56 240 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 GAL3ST4Q96RP7 486 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 RBBP8Q99708 897 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 ALG9Q9H6U8 611 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 ZNF703Q9H7S9 590 aaPredicted RBP12.23□□□□□ -0.45
HMGB3-204ENST00000448905 SH2D2AQ9NP31 389 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 SAYSD1Q9NPB0 183 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 LYARQ9NX58 379 aaKnown RBP12.23□□□□□ -0.45
HMGB3-204ENST00000448905 NUDT4Q9NZJ9 180 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 SPRR3Q9UBC9 169 aa12.23□□□□□ -0.45
HMGB3-204ENST00000448905 CCDC189A1A4V9 331 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 CXorf49A8MYA2 514 aaPredicted RBP12.22□□□□□ -0.45
HMGB3-204ENST00000448905 CDH16O75309 829 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 PIAS1O75925 651 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 WISP3O95389 354 aaPredicted RBP12.22□□□□□ -0.45
HMGB3-204ENST00000448905 SLC35E2BP0CK96 405 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 SLC35E2P0CK97 266 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 FOSL1P15407 271 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 EPORP19235 508 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 GCKP35557 465 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 TRPC1P48995 793 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 TMED10P49755 219 aaKnown RBP12.22□□□□□ -0.45
HMGB3-204ENST00000448905 ASCL1P50553 236 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 HERVK_113P63132 956 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 ERVK-8P63133 956 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 TOMM20Q15388 145 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 GRHL2Q6ISB3 625 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 CCDC91Q7Z6B0 441 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 ISCA2Q86U28 154 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 LACC1Q8IV20 430 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 TEX9Q8N6V9 391 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 OR10G3Q8NGC4 313 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 HSPBAP1Q96EW2 488 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 POM121Q96HA1 1249 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 ZNF597Q96LX8 424 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 SECISBP2Q96T21 854 aaKnown RBP12.22□□□□□ -0.45
HMGB3-204ENST00000448905 MTERF1Q99551 399 aaKnown RBP12.22□□□□□ -0.45
HMGB3-204ENST00000448905 TIMP4Q99727 224 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 GPATCH1Q9BRR8 931 aaKnown RBP12.22□□□□□ -0.45
HMGB3-204ENST00000448905 ERVK-6Q9BXR3 956 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 WWTR1Q9GZV5 400 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 ACTR8Q9H981 624 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 SMYD2Q9NRG4 433 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 SNX15Q9NRS6 342 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 PSD3Q9NYI0 1048 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 CRIM1Q9NZV1 1036 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 ERVK-19Q9WJR5 959 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 ACOT9Q9Y305 439 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 TSC22D4Q9Y3Q8 395 aa12.22□□□□□ -0.45
HMGB3-204ENST00000448905 CHCHD2Q9Y6H1 151 aaPredicted RBP12.22□□□□□ -0.45
HMGB3-204ENST00000448905 TCRBV9S1A1TA0A576 114 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 TUBAL3A6NHL2 446 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 A6NNC1 897 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 FAM155BO75949 473 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 LTA4HP09960 611 aaKnown RBP12.21□□□□□ -0.45
HMGB3-204ENST00000448905 FAM58BPP0C7Q3 252 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 KRT15P19012 456 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 MASP1P48740 699 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 SLC37A1P57057 533 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 TNFRSF17Q02223 184 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 DUSP8Q13202 625 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 CUL3Q13618 768 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 DAZAP2Q15038 168 aaPredicted RBP12.21□□□□□ -0.45
HMGB3-204ENST00000448905 CEBPEQ15744 281 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 ZKSCAN8Q15776 578 aaPredicted RBP12.21□□□□□ -0.45
HMGB3-204ENST00000448905 NTRK2Q16620 822 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 FAM83EQ2M2I3 478 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 SPRED3Q2MJR0 410 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 FLYWCH1Q4VC44 716 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 C6orf163Q5TEZ5 329 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 C18orf63Q68DL7 685 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 ALPK1Q96QP1 1244 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 ERP44Q9BS26 406 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 SLC6A15Q9H2J7 730 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 ZNF358Q9NW07 568 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 WHRNQ9P202 907 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 TNPO3Q9Y5L0 923 aaKnown RBP12.21□□□□□ -0.45
HMGB3-204ENST00000448905 NPFFR2Q9Y5X5 522 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 IKBKGQ9Y6K9 419 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 CCDC168Q8NDH2 2452 aa12.21□□□□□ -0.45
HMGB3-204ENST00000448905 SETD2Q9BYW2 2564 aaPredicted RBP12.2□□□□□ -0.46
HMGB3-204ENST00000448905 FAM187AA6NFU0 413 aa12.2□□□□□ -0.46
HMGB3-204ENST00000448905 FAM159BA6NKW6 160 aa12.2□□□□□ -0.46
HMGB3-204ENST00000448905 HRKO00198 91 aa12.2□□□□□ -0.46
HMGB3-204ENST00000448905 PLPP1O14494 284 aa12.2□□□□□ -0.46
HMGB3-204ENST00000448905 TP73O15350 636 aa12.2□□□□□ -0.46
HMGB3-204ENST00000448905 KERAO60938 352 aa12.2□□□□□ -0.46
HMGB3-204ENST00000448905 TRIM3O75382 744 aaPredicted RBP12.2□□□□□ -0.46
HMGB3-204ENST00000448905 ACSL3O95573 720 aa12.2□□□□□ -0.46
HMGB3-204ENST00000448905 EPXP11678 715 aa12.2□□□□□ -0.46
HMGB3-204ENST00000448905 ENDOUP21128 410 aaKnown RBP12.2□□□□□ -0.46
HMGB3-204ENST00000448905 PIK3R1P27986 724 aa12.2□□□□□ -0.46
HMGB3-204ENST00000448905 CEACAM8P31997 349 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms