RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 FAM170BA6NMN3 283 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 NOTOA8MTQ0 251 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 FAM47E-STBD1D6RA91 191 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 SCN2BO60939 215 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 RGS8P57771 180 aaPredicted RBP11.29□□□□□ -0.6
MSH6-204ENST00000445503 COX10Q12887 443 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 SNAP47Q5SQN1 464 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 TRIM63Q969Q1 353 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 SPATA5L1Q9BVQ7 753 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 OR51I1Q9H343 314 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 KLHL42Q9P2K6 505 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 MUTYHQ9UIF7 546 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 SNX11Q9Y5W9 270 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 A0A1B0GVC2 190 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 A6NIN4 97 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 PLD2O14939 933 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 CAPN5O15484 640 aaPredicted RBP11.29□□□□□ -0.6
MSH6-204ENST00000445503 C1orf105O95561 183 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 NOS3P29474 1203 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 NXNL2Q5VZ03 156 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 HTR3DQ70Z44 454 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 SUSD6Q92537 303 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 TRMT2BQ96GJ1 504 aaKnown RBP11.29□□□□□ -0.6
MSH6-204ENST00000445503 RANGRFQ9HD47 186 aaPredicted RBP11.29□□□□□ -0.6
MSH6-204ENST00000445503 SPHK2Q9NRA0 654 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 NKIRAS2Q9NYR9 191 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 NLKQ9UBE8 527 aa11.29□□□□□ -0.6
MSH6-204ENST00000445503 ABLIM3O94929 683 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 ADAP00813 363 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 NPPBP16860 134 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 PSMB5P28074 263 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 ARHGEF6Q15052 776 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 SLC35F1Q5T1Q4 408 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 SMPDL3AQ92484 453 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 ECHDC3Q96DC8 303 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 CTRCQ99895 268 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 QRSL1Q9H0R6 528 aaKnown RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 IRF2BPLQ9H1B7 796 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 TMPRSS11EQ9UL52 423 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 SH2B3Q9UQQ2 575 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 KLK4Q9Y5K2 254 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 CD8B2A6NJW9 211 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 RAB36O95755 333 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 EPHX1P07099 455 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 YES1P07947 543 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 SRPRAP08240 638 aaKnown RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 ARAFP10398 606 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 CD8BP10966 210 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 KELP23276 732 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 RAE1P78406 368 aaKnown RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 KLHL22Q53GT1 634 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 CEP78Q5JTW2 689 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 CCSAPQ6IQ19 270 aaPredicted RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 B3GLCTQ6Y288 498 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 LINC00299Q6ZSB3 139 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 FAM92BQ6ZTR7 304 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 NUDT13Q86X67 352 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 TCEAL8Q8IYN2 117 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 ATP6V1C2Q8NEY4 427 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 OR8D1Q8WZ84 308 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 CCDC32Q9BV29 185 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 OR2B2Q9GZK3 357 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 OR51V1Q9H2C8 321 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 SPNS1Q9H2V7 528 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 ING3Q9NXR8 418 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 CNIH4Q9P003 139 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 ADAM30Q9UKF2 790 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 PCDHGA3Q9Y5H0 932 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 KIAA0100Q14667 2235 aaKnown RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 ARID1BQ8NFD5 2236 aaPredicted RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 ISM1B1AKI9 464 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 FAAHO00519 579 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 ACP5P13686 325 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 SMSP52788 366 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 CDH11P55287 796 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 ZNF791Q3KP31 576 aaPredicted RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 PAMR1Q6UXH9 720 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 LIPIQ6XZB0 460 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 COQ7Q99807 217 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 TTTY10Q9BZA0 68 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 HOXD1Q9GZZ0 328 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 STMN3Q9NZ72 180 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 GREB1Q4ZG55 1949 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 C2orf92A0A1B0GVN3 265 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 WASHC1A8K0Z3 465 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 ERI3O43414 337 aaKnown RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 CSO75390 466 aaKnown RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 SLCO2B1O94956 709 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 RPN2P04844 631 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 FAM46CQ5VWP2 391 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 MZT2AQ6P582 158 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 WASH2PQ6VEQ5 465 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 HSDL2Q6YN16 418 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 WDR53Q7Z5U6 358 aaPredicted RBP11.28□□□□□ -0.6
MSH6-204ENST00000445503 Q8N402 240 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 TBC1D19Q8N5T2 526 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 OR5P2Q8WZ92 322 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 C12orf66Q96MD2 445 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 VN1R3Q9BXE9 311 aa11.28□□□□□ -0.6
MSH6-204ENST00000445503 HS3ST2Q9Y278 367 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms